Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03450 174 / 1e-47 GRAS RGL2 RGA-like 2 (.1) AT2G01570 170 / 1e-45 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G66350 169 / 1e-45 GRAS RGL1 RGA-like 1 (.1) AT1G14920 164 / 7e-44 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT5G17490 161 / 7e-43 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT2G37650 150 / 3e-38 GRAS SCL9 GRAS family transcription factor (.1) AT1G07520 146 / 6e-37 GRAS GRAS family transcription factor (.1) AT2G29065 143 / 3e-36 GRAS family transcription factor (.1) AT1G55580 139 / 1e-35 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT5G59450 140 / 2e-35 GRAS SCL11 GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037758 [exp] 716 / 0 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10016897 [exp] 705 / 0 AT3G03450 189 / 5e-53 RGA-like 2 (.1) Lus10016894 [exp] 507 / 4e-177 AT1G66350 155 / 4e-42 RGA-like 1 (.1) Lus10037756 [exp] 407 / 5e-137 AT1G50420 156 / 5e-42 scarecrow-like 3 (.1) Lus10016891 [exp] 403 / 1e-135 AT3G03450 152 / 2e-40 RGA-like 2 (.1) Lus10016892 [exp] 395 / 2e-132 AT1G50420 155 / 1e-41 scarecrow-like 3 (.1) Lus10037753 [exp] 339 / 4e-110 AT1G66350 156 / 8e-42 RGA-like 1 (.1) Lus10016895 [exp] 305 / 3e-101 AT3G03450 112 / 5e-29 RGA-like 2 (.1) Lus10023621 [exp] 306 / 4e-97 AT3G03450 181 / 4e-50 RGA-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143500 [exp] 450 / 1e-152 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.010G143700 [exp] 433 / 2e-145 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143600 [exp] 427 / 1e-143 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.002G195600 [exp] 376 / 8e-124 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.010G143400 [exp] 359 / 6e-118 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.010G143200 [exp] 324 / 6e-105 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.014G120000 [exp] 312 / 4e-99 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.008G131700 [exp] 179 / 6e-49 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 172 / 2e-46 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.001G241900 [exp] 171 / 2e-45 AT1G07530 497 / 4e-167 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10016893 pacid=23179044 polypeptide=Lus10016893 locus=Lus10016893.g ID=Lus10016893.BGIv1.0 annot-version=v1.0 ATGGCCGATCAAATCTTCTCGTTCCAATTCAATCATGCCGGAATTCAGGATCAACTGCCGAATCATCAAAACTTCCACTCCGACCCCTTCAGCTTATTCG AAGGCTGGATATCTCCGCAAGCCTCCTCCGATCATCATCAGCATGACCTGCAGTACTTTCCGTTCCTAAGCTACGAATATAATGAGCCGATTCACCATGA GAATCATCACATCTCTGTGCCAATATCGGAGCTCGACGAAATGATCCGCCGGCAAGTAGGTGTAAATGACAAACCGCAAGCACTCTCGGAGCTGGACGAA CTGATTTACAGCACCCAGGTACCCGTGAATGAAAAATCCATTCCTAAAAATCCTAGAATTTCTACTTGTGGTTTGTCGTCGCCTTTGTTCGACCTGTTGA GAGGCCCCACGAATGGTTCTAGGAAACGTCTGAATAATAACGATGCTGGTACTAGAGTTTGTAAAACGATCAACAACGACACGGTTGATGCGGTTGATTC TGTACGATTAATGTCGACCGAAGAGCTTGTGAGGATCGCAGGAGCTAGGTTTATACAGTCGTCTTACAAATCAGGAGATTTGGTCAGTAAGCCTTGTGAC TTTTCCTTCTCTGGACTCTCCGATGATGAGTTTAGAAACGTGGAGCTAGTCGAGTTCCTACTCACGGCTGCTGAGAAAGTTGGGGACGAACAGTTCGAAA GGGCGAGGAATTTACTGACTGAGTGTGAGCTTCAGTCGTCTCCGTCAGGGGACTCTGTCCAGCGATTAGTGCACTACTTCACTCGAGCTCTTCGAGAGAG GATCGATCGCAAAACAGGTAAGGGAAGCGATGAGAAATCAGCAGCGTCTATCCACGAGATATTTATGCCACCAAAGGAATGTTTCCTCGAATTCTACGAG AAGGTACCGTTCGGGCAGGTTTCCGAGTTTGCTGCTATTCAAGCTGTTGTGGACAGTGTGGCTAATGCAACAAGGATTCACATTGTTGACTTCAACATCA AGAACGGAGAGCAATGGATTATCTTCATGCAAGCATTGGTCTCGAGAGAGGCGAATCCGGTGGATCGTCTGAAAATTACTGCAATCGGAACAATGGGGAG AGACTTGTTGGAAGAGACAGGGAAATGGCTGACCGGATTTGCGGAAACAATGGCATTGTCATTTTCTTTCAAGCTGATCATGGTGGAAGGCTTCATGGAC CTCGAACAAGACATGTTCGAGGTAGATAGGGACGAAACGGTAGCCATCTTGGCCGAGTATATCTTAACAACTCTAATCTCTTCGATAGAGAAGCTGGACT ATGTAATGAACGTGATGCGGCACCTAAACCCTTGTGTGATGGTGGTGACCGAGGTCGAATCGAACCAGAACTCACCAGTTTTCGTCAACCGGTTCATCGA GACACTCTTTTACACGAGCGCGTTCTTCGATTGCTTGGAGGTTTGTATGGACAGGGACAGCCCGCACAGGATGTTCGCAGAGTCTAGGTTTTTCGGGGAA GGTGCGAAGATTGTGGTTGCTGCAGAAGGGGAAGAGAGGGTGATTCGGAGCGTGAAGATGGAAACGTGGAGAGGCTATTTTGGGAGGTCGAGGATGGAAG AGGCGGATTTGAGCTTCTCGTGCTTGTATCAAGCTGAGTTGGTGTCTAAGAAGTTCCCCAGTTGGAGATTCTGCAGCGTTGGTAGGGATGGGAAGAGCTT GATTGTTCGCTGGAAAGGCACCCCGATTCATTCTGTTACTGCTTGGAAGTTCAACACCGAGAGTGAAGTTTACGTGTGA
AA sequence Show only first row Show all	>Lus10016893 pacid=23179044 polypeptide=Lus10016893 locus=Lus10016893.g ID=Lus10016893.BGIv1.0 annot-version=v1.0 MADQIFSFQFNHAGIQDQLPNHQNFHSDPFSLFEGWISPQASSDHHQHDLQYFPFLSYEYNEPIHHENHHISVPISELDEMIRRQVGVNDKPQALSELDE LIYSTQVPVNEKSIPKNPRISTCGLSSPLFDLLRGPTNGSRKRLNNNDAGTRVCKTINNDTVDAVDSVRLMSTEELVRIAGARFIQSSYKSGDLVSKPCD FSFSGLSDDEFRNVELVEFLLTAAEKVGDEQFERARNLLTECELQSSPSGDSVQRLVHYFTRALRERIDRKTGKGSDEKSAASIHEIFMPPKECFLEFYE KVPFGQVSEFAAIQAVVDSVANATRIHIVDFNIKNGEQWIIFMQALVSREANPVDRLKITAIGTMGRDLLEETGKWLTGFAETMALSFSFKLIMVEGFMD LEQDMFEVDRDETVAILAEYILTTLISSIEKLDYVMNVMRHLNPCVMVVTEVESNQNSPVFVNRFIETLFYTSAFFDCLEVCMDRDSPHRMFAESRFFGE GAKIVVAAEGEERVIRSVKMETWRGYFGRSRMEEADLSFSCLYQAELVSKKFPSWRFCSVGRDGKSLIVRWKGTPIHSVTAWKFNTESEVYV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10016893 [exp]	0	1
AT2G34930			disease resistance family prot...		Lus10000236 [exp]	1.4	0.8470
AT2G34930			disease resistance family prot...		Lus10002758 [exp]	2.4	0.8368
AT2G34930			disease resistance family prot...		Lus10002757 [exp]	4.5	0.7506
AT5G48385			FRIGIDA-like protein (.1)		Lus10038038 [exp]	4.9	0.7466
AT2G40080		ELF4	EARLY FLOWERING 4, Protein of ...		Lus10028288 [exp]	7.3	0.7932
AT5G24090		ATCHIA	chitinase A (.1)		Lus10023534 [exp]	9.4	0.7508
AT1G05370			Sec14p-like phosphatidylinosit...		Lus10021919 [exp]	10.0	0.6875
AT1G03390			HXXXD-type acyl-transferase fa...		Lus10033079 [exp]	24.7	0.7396
AT1G03390			HXXXD-type acyl-transferase fa...		Lus10017744 [exp]	25.1	0.6927
AT1G65390		ATPP2-A5	phloem protein 2 A5 (.1.2)		Lus10040606 [exp]	29.5	0.7017

Compare expression of checked genes

Lus10016893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.