Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03450 112 / 4e-29 GRAS RGL2 RGA-like 2 (.1) AT1G14920 105 / 2e-26 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT2G01570 105 / 3e-26 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT5G17490 104 / 4e-26 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G66350 101 / 5e-25 GRAS RGL1 RGA-like 1 (.1) AT5G66770 92 / 1e-21 GRAS GRAS family transcription factor (.1) AT3G46600 90 / 5e-21 GRAS GRAS family transcription factor (.1.2.3) AT5G59450 89 / 2e-20 GRAS SCL11 GRAS family transcription factor (.1) AT1G63100 89 / 2e-20 GRAS GRAS family transcription factor (.1) AT1G07520 87 / 5e-20 GRAS GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016893 [exp] 305 / 8e-102 AT3G03450 175 / 1e-47 RGA-like 2 (.1) Lus10016897 [exp] 287 / 7e-95 AT3G03450 189 / 5e-53 RGA-like 2 (.1) Lus10037758 [exp] 285 / 3e-94 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10016894 [exp] 257 / 5e-85 AT1G66350 155 / 4e-42 RGA-like 1 (.1) Lus10037756 [exp] 209 / 5e-66 AT1G50420 156 / 5e-42 scarecrow-like 3 (.1) Lus10016891 [exp] 206 / 9e-65 AT3G03450 152 / 2e-40 RGA-like 2 (.1) Lus10016892 [exp] 192 / 4e-59 AT1G50420 155 / 1e-41 scarecrow-like 3 (.1) Lus10036459 [exp] 155 / 9e-45 AT3G03450 171 / 1e-46 RGA-like 2 (.1) Lus10037753 [exp] 154 / 1e-44 AT1G66350 156 / 8e-42 RGA-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143500 [exp] 208 / 8e-65 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.010G143700 [exp] 198 / 2e-60 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143600 [exp] 181 / 3e-54 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.014G120000 [exp] 171 / 1e-50 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.002G195600 [exp] 167 / 4e-49 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.010G143400 [exp] 160 / 6e-47 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.010G143200 [exp] 159 / 6e-47 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.017G125200 [exp] 114 / 2e-29 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 112 / 1e-28 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 107 / 5e-27 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10016895 pacid=23179118 polypeptide=Lus10016895 locus=Lus10016895.g ID=Lus10016895.BGIv1.0 annot-version=v1.0 ATGCCGACAAGGGAATGCTTCCTCGAGTTCTGCGACAAGGTGCCATCCGGACCGGTTTCACAGTTTGCCGCTATCCAAGCTATTGTGGACAGTGTGGCTA AGGCGACAAGGATTCACATTGTAGATTTTAACATCAAGCACGGGGAGCAATGGATTATCTTTATGCAAGCATTGGTCGAGGAAAATTGGAAAAATCCGGT GGAGCATCTCAAGATAACTGCGATTGGGACAATGAGGAAGGACATGTTGGAAGAGACTGGTCAAAGGTTGATAGATTTTGCACAAGCTATGGCATTGTCG TTCTCTTTCAAGATGATCATGGTGGAAGACTTCATGGATCTTGAGCAAGACATGTTCGAGGTAGACAGCGACGAGACAGTTGCAGTCCTGGCCGAGTACC TATTGACAACCATCATCTCGCGGGTCGAGAAGGTGGACTCCGTGATGAAGTTGATTCGAGGCCTCAACCCTTGTGTGATGGTGGTGACCGAGGTCGAATC GAACCAGAACTCTCCGGTTTTCGTTAACAGGCTCGTGGAGATGCTTTTTTCTGCGAGCGCGTTTTTTTATTGCCTCGAAGTTTGTATGTAG
AA sequence Show only first row Show all	>Lus10016895 pacid=23179118 polypeptide=Lus10016895 locus=Lus10016895.g ID=Lus10016895.BGIv1.0 annot-version=v1.0 MPTRECFLEFCDKVPSGPVSQFAAIQAIVDSVAKATRIHIVDFNIKHGEQWIIFMQALVEENWKNPVEHLKITAIGTMRKDMLEETGQRLIDFAQAMALS FSFKMIMVEDFMDLEQDMFEVDSDETVAVLAEYLLTTIISRVEKVDSVMKLIRGLNPCVMVVTEVESNQNSPVFVNRLVEMLFSASAFFYCLEVCM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10016895 [exp]	0	1
AT1G24420			HXXXD-type acyl-transferase fa...		Lus10025521 [exp]	16.4	0.6289
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10004511 [exp]	24.7	0.6258
AT5G05340			Peroxidase superfamily protein...		Lus10030145 [exp]	28.2	0.5813
AT4G18180			Pectin lyase-like superfamily ...		Lus10016824 [exp]	39.3	0.5945
AT4G23690			Disease resistance-responsive ...		Lus10028750 [exp]	49.2	0.5611
					Lus10019456 [exp]	110.4	0.5524
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10022426 [exp]	131.6	0.5526
AT2G14830			Regulator of Vps4 activity in ...		Lus10018577 [exp]	183.1	0.5420

Compare expression of checked genes

Lus10016895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.