Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03450 189 / 5e-53 GRAS RGL2 RGA-like 2 (.1) AT1G66350 178 / 2e-49 GRAS RGL1 RGA-like 1 (.1) AT1G14920 174 / 8e-48 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT2G01570 174 / 3e-47 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT5G17490 171 / 1e-46 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT2G37650 159 / 2e-41 GRAS SCL9 GRAS family transcription factor (.1) AT5G59450 152 / 2e-39 GRAS SCL11 GRAS family transcription factor (.1) AT2G29060 148 / 8e-38 GRAS GRAS family transcription factor (.1) AT1G07520 148 / 1e-37 GRAS GRAS family transcription factor (.1) AT3G46600 142 / 6e-37 GRAS GRAS family transcription factor (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037758 [exp] 1060 / 0 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10016893 [exp] 687 / 0 AT3G03450 175 / 1e-47 RGA-like 2 (.1) Lus10016894 [exp] 526 / 0 AT1G66350 155 / 4e-42 RGA-like 1 (.1) Lus10037756 [exp] 429 / 3e-146 AT1G50420 156 / 5e-42 scarecrow-like 3 (.1) Lus10016891 [exp] 419 / 5e-142 AT3G03450 152 / 2e-40 RGA-like 2 (.1) Lus10016892 [exp] 419 / 7e-142 AT1G50420 155 / 1e-41 scarecrow-like 3 (.1) Lus10036459 [exp] 330 / 1e-106 AT3G03450 171 / 1e-46 RGA-like 2 (.1) Lus10023621 [exp] 315 / 1e-100 AT3G03450 181 / 4e-50 RGA-like 2 (.1) Lus10001451 [exp] 311 / 3e-100 AT5G17490 179 / 7e-51 RGA-like protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143500 [exp] 468 / 3e-160 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.010G143700 [exp] 452 / 2e-153 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143600 [exp] 436 / 4e-147 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.002G195600 [exp] 395 / 1e-131 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.010G143400 [exp] 383 / 1e-127 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.014G120000 [exp] 329 / 4e-106 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.010G143200 [exp] 313 / 3e-101 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.008G131700 [exp] 178 / 2e-48 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 177 / 3e-48 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 175 / 1e-47 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10016897 pacid=23179084 polypeptide=Lus10016897 locus=Lus10016897.g ID=Lus10016897.BGIv1.0 annot-version=v1.0 ATGGCGCACCAGATCTCCTCATTCCAGTTCAATAATGGCGGAATTCAAGACCAGCACCTTTCCGTATCGAATCAAAGCTTCGACTCCGATCCAATCAGCT TATTCGAAAGCTGGATAGCTAGGGACCACGATCACCAATCGCTGTTTCCGAGCTACGACAACAATGACGAAGATTATCCGCTGATTCACCACCAGAGTAT TATGATCTCCGATCCTCAAGCAATCTCGGATGATTTCAACGGCATCGTCAACAGGCAAGTATCCGTAGACAGTTCAGATGAACAGATTATTAACGGAAAT CTCGAGATCCCCAATTCTGATTCAGCATCATCTTTATTTGACATGCTGAGAGTCGCTAGAAACGGTTCGAGGAAACGGAATAGTAGCTTTCTTACAGTTC ATAAATCGAGCGATGATAGTGTAATTGATGCGGTTGATTCGGTAGGATTTTCAACTGAAGAGCTTATAAGAATTGCAGGAGCTAAGTTCATCCATTTCTC TTCGGAATTGGGCGATTCCGTCACAAGCTCTTTTGACCTAACTTTCTTTGGCCTTTCCGATGAAGAGTTGAAAAACGTGGAGCTAGCCGAATTCCTGCTG ATGGCTGCCGAAAAAATCGGGGACGAACAGTTCGAAAGAGCCGGAAGTTTGTTGACTGAGTGTGATCTCCAGTCGTCTGCTACTGGAGATCCGGTCCAAC GATTAGTGTACTACTTCTCTCAAGCTCTTTGGGAGAGGATCGACCGCCAGACCAAAAAGCAAACTGTGGAGAAATCCCCCAAGATTCCGAAAGTTCAAGC GATGATGATGCCGCCAAGGGAATGCTTCCTCGAGTTCTACGAGAAGGTACCGTTCGCGCAAGTTTCCGAGTTTGCTGCTATCCAAGCTGTTGTGGATAGC GTAGCTACATCAAGAAGGATTCACATTGTTGATTTCAATATTAAGAATGGAGAGCAATGGACAATTTTCATGCAAGCATTAGTTTCTAGAGAGGAAAGTA CTCCAGTGGATCATGTCAAGATAACTGCAATTGGGACAGTGGGGAAAGAAATGCTGGAAGAGACTGGGAAAAGATTGATTGGATTTGCAGAAGCTATGAA ATTGTCGTTCTCTTTCAAGCTGGTGATGGTGGAAGACTTGTTGGACCTTAAGGAGGAAATGTTCGAGATAGATTGCGACGAAACGGTTGCAGTCTTGTCT GAATACCTCTTCACAACTCTAATCTCATCGGTAGTGAAGTTGGACTATGTGATGAAGATGATCTGGAAGATAAAACCATGTGTGATGGTTGTGACCGAGG TGGAATCGAATCATAACTCTCCGGTTTTCGTCAACCGGTTCATCGAGGCTCTTTTCTACGTAAGTGCTTATTTCGATTGCTTGGAGACTTGTATGGAGAG GGACAACCCGCACAGGTTGTTTGCAGAATCATCGTTTTTTGGGGAAGGGACCAAGATCGTAGTGGCTAACGAAGGGGAAGAGAGGGCGATTCGGAATGTG ACAATGGATGTTTGGAGGGCTTATTTTCGACGGTTTGGGATGGAAGAAGCGGATTTGAGCTTGTCTTGTGTTTACCAAGCGGAGTTGGTGGCTAAGAAGT TTCCGTGTTGGAGGTCTTGCACAGTTGATTTGGATGGTAAGAGCCTTATTGTTGGGTGGAAAGGCACCCCGATTCATTCTGTTACTGCTTGGAACTTTAA CTGCGAATGA
AA sequence Show only first row Show all	>Lus10016897 pacid=23179084 polypeptide=Lus10016897 locus=Lus10016897.g ID=Lus10016897.BGIv1.0 annot-version=v1.0 MAHQISSFQFNNGGIQDQHLSVSNQSFDSDPISLFESWIARDHDHQSLFPSYDNNDEDYPLIHHQSIMISDPQAISDDFNGIVNRQVSVDSSDEQIINGN LEIPNSDSASSLFDMLRVARNGSRKRNSSFLTVHKSSDDSVIDAVDSVGFSTEELIRIAGAKFIHFSSELGDSVTSSFDLTFFGLSDEELKNVELAEFLL MAAEKIGDEQFERAGSLLTECDLQSSATGDPVQRLVYYFSQALWERIDRQTKKQTVEKSPKIPKVQAMMMPPRECFLEFYEKVPFAQVSEFAAIQAVVDS VATSRRIHIVDFNIKNGEQWTIFMQALVSREESTPVDHVKITAIGTVGKEMLEETGKRLIGFAEAMKLSFSFKLVMVEDLLDLKEEMFEIDCDETVAVLS EYLFTTLISSVVKLDYVMKMIWKIKPCVMVVTEVESNHNSPVFVNRFIEALFYVSAYFDCLETCMERDNPHRLFAESSFFGEGTKIVVANEGEERAIRNV TMDVWRAYFRRFGMEEADLSLSCVYQAELVAKKFPCWRSCTVDLDGKSLIVGWKGTPIHSVTAWNFNCE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10016897 [exp]	0	1
AT3G03210			unknown protein		Lus10031359 [exp]	2.4	0.9309
AT2G37585			Core-2/I-branching beta-1,6-N-...		Lus10024404 [exp]	6.0	0.9171
AT4G08810		SUB1	calcium ion binding (.1)		Lus10039176 [exp]	6.5	0.9367
AT3G51990			Protein kinase superfamily pro...		Lus10019753 [exp]	11.0	0.8936
AT4G10840			Tetratricopeptide repeat (TPR)...		Lus10017304 [exp]	11.7	0.9054
AT1G51630			O-fucosyltransferase family pr...		Lus10035749 [exp]	13.1	0.9046
AT5G18520			Lung seven transmembrane recep...		Lus10025283 [exp]	13.6	0.9079
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Lus10032530 [exp]	14.2	0.9288
AT1G22610			C2 calcium/lipid-binding plant...		Lus10009459 [exp]	18.2	0.9043
AT4G10840			Tetratricopeptide repeat (TPR)...		Lus10003201 [exp]	18.9	0.8995

Compare expression of checked genes

Lus10016897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.