Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14410 409 / 2e-143 Nucleotide/sugar transporter family protein (.1) AT1G53660 401 / 3e-140 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G17430 233 / 6e-74 Nucleotide-sugar transporter family protein (.1) AT1G48230 220 / 8e-69 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G11230 207 / 4e-64 Nucleotide-sugar transporter family protein (.1) AT4G32390 206 / 7e-64 Nucleotide-sugar transporter family protein (.1) AT2G25520 205 / 2e-63 Drug/metabolite transporter superfamily protein (.1) AT5G25400 202 / 3e-62 Nucleotide-sugar transporter family protein (.1) AT1G06470 74 / 2e-14 Nucleotide/sugar transporter family protein (.1.2) AT3G10290 72 / 5e-14 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017115 [exp] 230 / 2e-72 AT3G17430 593 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10018339 [exp] 229 / 4e-72 AT3G17430 615 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10002023 [exp] 215 / 3e-67 AT4G32390 631 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10002904 [exp] 215 / 3e-67 AT4G32390 632 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10010954 [exp] 69 / 1e-12 AT1G06470 554 / 0.0 Nucleotide/sugar transporter family protein (.1.2) Lus10016446 [exp] 67 / 4e-12 AT5G05820 508 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10009878 [exp] 64 / 3e-11 AT3G11320 548 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10042039 [exp] 64 / 3e-11 AT3G10290 526 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10018043 [exp] 64 / 3e-11 AT3G10290 528 / 0.0 Nucleotide-sugar transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G394500 [exp] 463 / 1e-164 AT3G14410 496 / 5e-178 Nucleotide/sugar transporter family protein (.1) Potri.008G214300 [exp] 233 / 8e-74 AT3G17430 569 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.010G001700 [exp] 232 / 2e-73 AT3G17430 589 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.018G028900 [exp] 208 / 2e-64 AT4G32390 568 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.006G252500 [exp] 200 / 2e-61 AT4G32390 537 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.006G278700 [exp] 76 / 4e-15 AT1G06470 542 / 0.0 Nucleotide/sugar transporter family protein (.1.2) Potri.006G046600 [exp] 70 / 3e-13 AT5G04160 503 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.016G043200 [exp] 69 / 5e-13 AT5G04160 512 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.003G118000 [exp] 64 / 2e-11 AT1G12500 503 / 4e-180 Nucleotide-sugar transporter family protein (.1) Potri.010G194100 [exp] 64 / 3e-11 AT3G11320 572 / 0.0 Nucleotide-sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10016923 pacid=23159618 polypeptide=Lus10016923 locus=Lus10016923.g ID=Lus10016923.BGIv1.0 annot-version=v1.0 ATGGCGGATCAGAAGAAGGAAAACATCCTGACTTATGCTTACATTCTTCTCTACATAGCTCTCTCTAGTGGCCAGATCTTCTTCAACAAGGTGGGAGAGA AGCTAAGACTACTAGGAGGTTGTCCTGTGAAAAGTAATTCCACCGGTATCCAGCCTTGGGTTTTATCATCCAAAGATATAAACTTTCCTTATCCCCTTGG ATTGACTCTGCTCCACATGGTCTTCTCATCCGTTTTATGCTTTGCTCTCACCAGATTGTTCAAGGTTTTGAAGGTTGAGGAAGGAATGACATTAGAGATA TATACGACGTCAGTTATTCCAATTGGAGCTACTTTTGCAATGACACTTTGGCTTGGGAATACCGCTTACCTGTATATTTCGGTGGCGTTTGCTCAGATGC TAAAGGCTGTCATGCCAGTTGCCGTCTTCATTCTTGGAGTAGCCGCTGGACTGGAGCTAATGAGCTGTAGAATGTTACTCATCATGTCAGTGATTAGCTT TGGGGTTCTAGTGGCATCGTATGGAGAAATAAACATCAGTTGGGTTGGAGTTGTGTATCAGATGGGTGGAGTTGTTGGGGAAGCCTTGAGGCTTATATTC ATGGAAATTCTTGTTAAAAGGAAAGGTCTGAAGTTGAACCCGATATCTGTGATTGCAATTTTCCTATTCATTCCGTGGATCTTTCTAGAGAAACCGAGGA TGGAAGCTCAAGGCACATGGAATTTTCAGCCTGTTGTGCTTATGCTCAACTCTCTCTGCACTTTTGCCCTCAACCTATCAGTTTTCCTTGTCATCTCACA CACGAGTGCTCTTACCATCCGTGTAGCTGGAGTTGTTAAGGATTGGGTGGTAGTCTTGCTTTCTGCTCTTCTTTTCGCAGATACAAAGCTTACAATCATA AACCTGTTCGGCTATGGCATTGCGATTGCGGGTGTAGCAGCATATAACAACACCAAGTTGAAGAAGGAAGCCTCTGGAGATAGTTCTGCCGACACGAGAC CACAAGTTGGTACTGAAGAAGAATCCATTCCGCTGACTAGTTCATCAACTTCTAACAGTTAA
AA sequence Show only first row Show all	>Lus10016923 pacid=23159618 polypeptide=Lus10016923 locus=Lus10016923.g ID=Lus10016923.BGIv1.0 annot-version=v1.0 MADQKKENILTYAYILLYIALSSGQIFFNKVGEKLRLLGGCPVKSNSTGIQPWVLSSKDINFPYPLGLTLLHMVFSSVLCFALTRLFKVLKVEEGMTLEI YTTSVIPIGATFAMTLWLGNTAYLYISVAFAQMLKAVMPVAVFILGVAAGLELMSCRMLLIMSVISFGVLVASYGEINISWVGVVYQMGGVVGEALRLIF MEILVKRKGLKLNPISVIAIFLFIPWIFLEKPRMEAQGTWNFQPVVLMLNSLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLLSALLFADTKLTII NLFGYGIAIAGVAAYNNTKLKKEASGDSSADTRPQVGTEEESIPLTSSSTSNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14410			Nucleotide/sugar transporter f...		Lus10016923 [exp]	0	1
AT4G25600			Oxoglutarate/iron-dependent ox...		Lus10014973 [exp]	4.9	0.8704
AT5G38790			unknown protein		Lus10034101 [exp]	5.7	0.8497
AT4G26550			Got1/Sft2-like vescicle transp...		Lus10032895 [exp]	6.5	0.8556
AT1G16470		PAB1	proteasome subunit PAB1 (.1.2)		Lus10036210 [exp]	8.2	0.8618
AT1G04040			HAD superfamily, subfamily III...		Lus10023731 [exp]	9.8	0.8453
AT5G47320		RPS19	ribosomal protein S19 (.1)		Lus10027711 [exp]	13.6	0.8536
AT1G26940			Cyclophilin-like peptidyl-prol...		Lus10037197 [exp]	13.9	0.8366
AT2G37195			unknown protein		Lus10026508 [exp]	14.9	0.8446
AT5G18800			Cox19-like CHCH family protein...		Lus10033991 [exp]	18.2	0.8591
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10002272 [exp]	18.4	0.8386

Compare expression of checked genes

Lus10016923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.