Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09460 287 / 4e-98 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT1G22640 263 / 2e-88 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT4G38620 256 / 4e-85 MYB AtMYB4 myb domain protein 4 (.1) AT1G35515 252 / 2e-84 MYB MYB8, HOS10 high response to osmotic stress 10 (.1) AT2G16720 251 / 4e-83 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT4G34990 246 / 2e-81 MYB ATMYB32 myb domain protein 32 (.1) AT3G02940 217 / 4e-69 MYB ATMYB107 myb domain protein 107 (.1) AT5G16770 216 / 1e-68 MYB ATMYB9 myb domain protein 9 (.1.2) AT4G28110 210 / 4e-67 MYB ATMYB41 myb domain protein 41 (.1) AT4G21440 211 / 1e-66 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000411 [exp] 461 / 4e-166 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10009448 [exp] 335 / 2e-116 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10001548 [exp] 332 / 6e-115 AT4G09460 291 / 2e-99 myb domain protein 6 (.1) Lus10028435 [exp] 236 / 4e-78 AT2G16720 246 / 2e-82 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10014129 [exp] 250 / 1e-77 AT4G38620 284 / 5e-90 myb domain protein 4 (.1) Lus10033473 [exp] 235 / 2e-77 AT2G16720 249 / 2e-83 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10041888 [exp] 234 / 2e-77 AT4G38620 245 / 5e-82 myb domain protein 4 (.1) Lus10018418 [exp] 213 / 2e-67 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10002593 [exp] 208 / 1e-65 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G109300 [exp] 301 / 2e-102 AT4G09460 262 / 9e-88 myb domain protein 6 (.1) Potri.019G081500 [exp] 292 / 5e-99 AT1G22640 277 / 1e-93 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.004G174400 [exp] 262 / 1e-87 AT4G38620 305 / 2e-104 myb domain protein 4 (.1) Potri.009G134000 [exp] 259 / 2e-86 AT4G38620 305 / 2e-104 myb domain protein 4 (.1) Potri.005G112000 [exp] 257 / 5e-86 AT4G38620 277 / 5e-94 myb domain protein 4 (.1) Potri.T011525 [exp] 259 / 9e-86 AT4G38620 257 / 5e-85 myb domain protein 4 (.1) Potri.T011400 [exp] 259 / 9e-86 AT4G38620 257 / 5e-85 myb domain protein 4 (.1) Potri.004G138000 [exp] 257 / 5e-85 AT4G38620 257 / 8e-85 myb domain protein 4 (.1) Potri.010G114000 [exp] 226 / 2e-74 AT4G38620 243 / 6e-81 myb domain protein 4 (.1) Potri.004G088100 [exp] 216 / 7e-70 AT4G09460 227 / 5e-75 myb domain protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10016948 pacid=23159625 polypeptide=Lus10016948 locus=Lus10016948.g ID=Lus10016948.BGIv1.0 annot-version=v1.0 ATGGGAAGGTCTCCTTGTTGTGAGAAGGCTCATACCAACAAAGGCGCTTGGACCAAAGAAGAAGACCAGCGTCTCATCGATTACATCCGCGGTCATGGCG AAGGTTGCTGGCGCTCCCTCCCTAAATCTGCTGGGTTGCTTAGATGTGGAAAGAGTTGCAGACTTCGATGGATAAATTACCTGAGGCCTGATCTCAAAAG GGGAAATTTCACCGATGAAGAGGATCAACTCATCATTAAGCTCCACAGCTTGCTCGGAAACAAATGGTCGTTGATTGCCGGAAGATTGCCAGGAAGAACA GACAACGAGATCAAGAACTACTGGAACACCCACATCAAGAGAAAACTTTTGAGCCACGGGATTGACCCGCAGACCCACCGTCCCCTGAACGAGAAACCAA CCGGAGCCGTCACCGCCACCACCGTTGCTCCTCCGGCGAAGCCAATACAGTTGGATTTCAAAACCAACAACGGCATCCTGAATTTCAAATTACAAACCGT GAAAGCAGAGTCCGTGGAGGAAAACAACTGCTCAAGCAGCGGCATGACGACCGACGAAGAACTGCCGCAGAGGCCCACCGCCACCGCAGCAGCGGCAGGT ACTCGAAGCCAACGAGATGAATTGAATTTGGATCTAACAATTGGGCTTTCTCCTTATTCGCAGCCGAGTTCTGCTTCTTCTGGCAACTCGGCCGAGTCGA AGCTTGATCAGTTTGGGCCAATAATTCAGTTTTCCGGTGCGGCGAAGGATGTTTGCGTGTGTTGGCAGCTGGGTTTTTCAGGGAAGTGCCGTTGCCAATA TTCCGGTGCCGGTGAGCTGCAAAGTAGATTTCAATATTAG
AA sequence Show only first row Show all	>Lus10016948 pacid=23159625 polypeptide=Lus10016948 locus=Lus10016948.g ID=Lus10016948.BGIv1.0 annot-version=v1.0 MGRSPCCEKAHTNKGAWTKEEDQRLIDYIRGHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEDQLIIKLHSLLGNKWSLIAGRLPGRT DNEIKNYWNTHIKRKLLSHGIDPQTHRPLNEKPTGAVTATTVAPPAKPIQLDFKTNNGILNFKLQTVKAESVEENNCSSSGMTTDEELPQRPTATAAAAG TRSQRDELNLDLTIGLSPYSQPSSASSGNSAESKLDQFGPIIQFSGAAKDVCVCWQLGFSGKCRCQYSGAGELQSRFQY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Lus10016948 [exp]	0	1
AT4G29350		PRF2, PFN2, PRO...	profilin 2 (.1)		Lus10012936 [exp]	2.2	0.8198
AT1G11360			Adenine nucleotide alpha hydro...		Lus10039730 [exp]	3.9	0.8119
AT3G05500			Rubber elongation factor prote...		Lus10029892 [exp]	6.9	0.7837
AT1G79340		AtMCP2d, ATMC4	metacaspase 2d, metacaspase 4 ...		Lus10001835 [exp]	11.8	0.7843
AT1G11360			Adenine nucleotide alpha hydro...		Lus10037867 [exp]	17.4	0.8137
AT3G22950		ATARFC1	ADP-ribosylation factor C1 (.1...		Lus10006632 [exp]	17.4	0.7613
AT1G08480		SDH6	succinate dehydrogenase 6, unk...		Lus10008448 [exp]	22.0	0.7950
AT3G08690		ATUBC11, UBC11	ubiquitin-conjugating enzyme 1...		Lus10009422 [exp]	23.1	0.8051
AT2G37035			unknown protein		Lus10026520 [exp]	26.3	0.7505
AT4G08330			unknown protein		Lus10025667 [exp]	26.7	0.7701

Compare expression of checked genes

Lus10016948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.