Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47140 238 / 2e-78 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 236 / 7e-77 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 230 / 3e-75 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G26770 228 / 7e-74 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 223 / 4e-72 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 222 / 5e-71 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 219 / 7e-71 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 213 / 2e-68 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 212 / 5e-68 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 213 / 7e-68 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021314 [exp] 519 / 0 AT3G51680 238 / 6e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016995 [exp] 517 / 0 AT3G51680 243 / 7e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021313 [exp] 517 / 0 AT3G26770 232 / 3e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021318 [exp] 516 / 0 AT3G51680 238 / 9e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021312 [exp] 506 / 0 AT3G51680 238 / 8e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10005262 [exp] 493 / 9e-179 AT3G51680 236 / 8e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014227 [exp] 357 / 7e-125 AT3G51680 231 / 3e-75 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032192 [exp] 350 / 1e-123 AT3G26770 149 / 2e-44 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014226 [exp] 337 / 4e-117 AT3G51680 230 / 1e-74 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G073900 [exp] 376 / 2e-132 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 367 / 5e-129 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 338 / 1e-117 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 334 / 1e-115 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 328 / 1e-113 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206700 [exp] 303 / 1e-103 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 303 / 1e-103 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 303 / 2e-103 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 291 / 6e-99 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 289 / 4e-98 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10016991 pacid=23172964 polypeptide=Lus10016991 locus=Lus10016991.g ID=Lus10016991.BGIv1.0 annot-version=v1.0 ATGGGATCCAACGCCGCATTTGTTTCATCGTCCAATGGTATTACTACTGCTCCGAGGCTAGGAGGCAAAGTGGCTCTAGTAACCGGCGGAGCAAGCGGCA TAGGCGAGAGCACTGTCAGGCTATTCCTCCAACACGGCGCCAAAGTTTTGATTGCCGATGTTCAGGATAAGCTCGGCCAGTCGCTCGCACTAGAACTTGG CCTGCCGGAGACTGTCTCATTCGTCCACTGCAACGTAACGAGTGATTCTGACGTCAAGAATGCAGTGGACACCGCAGTGTCGAGGTACGGCCAGCTGGAC ATCATGTACAACAACGCCGGGATCGGAGGCAACTTGGACACCGCGATCCTAAACTCCGACAACGACGACTTCAAGAGGGTGCTTGAAATCAACCTGTTCG GGTCTTTCTTAGGAGCCAAACACGCCGCGAGGGTGATGATCCCGGCGAGGAAAGGTTGCATATTGTTTACGGGGAGTGTGGCGGCCTCGATAAGCGGGGA CTTGTCGTACGCATACAAGGCGTCGAAGCATGCGATTTTGGGGCTCAATAATAACTTGACTGTGGAGTTGGGGAAGTACGGGATTAGAGTGAACACAATT TCTCCTTACGGGGTCGCCACTCCGATGGTGACGCGTGGCATGCAGATGGATAAGAAGGCTGCAGAGCAATTCATGTCTGCGGCTGGGAACTTGAGGGGTG CGGTGTTGGAGCCAGAGGATGTTGCTAAGGCTGCACTGTATTTAGCGAGCGATGATGCCAAGTATGTGAGCGGGTTGAATTTGATTGTGGATGGAGGTCA CAATCATAACCACCCTCTTTTTGGTGCTGCTCCATCCATGGCCAGCTAA
AA sequence Show only first row Show all	>Lus10016991 pacid=23172964 polypeptide=Lus10016991 locus=Lus10016991.g ID=Lus10016991.BGIv1.0 annot-version=v1.0 MGSNAAFVSSSNGITTAPRLGGKVALVTGGASGIGESTVRLFLQHGAKVLIADVQDKLGQSLALELGLPETVSFVHCNVTSDSDVKNAVDTAVSRYGQLD IMYNNAGIGGNLDTAILNSDNDDFKRVLEINLFGSFLGAKHAARVMIPARKGCILFTGSVAASISGDLSYAYKASKHAILGLNNNLTVELGKYGIRVNTI SPYGVATPMVTRGMQMDKKAAEQFMSAAGNLRGAVLEPEDVAKAALYLASDDAKYVSGLNLIVDGGHNHNHPLFGAAPSMAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10016991 [exp]	0	1
AT5G67550			unknown protein		Lus10025583 [exp]	1.0	0.9971
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10028378 [exp]	3.2	0.9885
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Lus10027481 [exp]	3.5	0.9823
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10034817 [exp]	3.5	0.9903
AT3G61510		AT-ACS1, ACS1	ARABIDOPSIS THALIANA 1-AMINOCY...		Lus10036396 [exp]	3.5	0.9915
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10021312 [exp]	3.7	0.9870
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10041830 [exp]	4.9	0.9886
					Lus10041164 [exp]	6.2	0.9821
AT2G42360			RING/U-box superfamily protein...		Lus10002194 [exp]	7.3	0.9880
AT5G39160			RmlC-like cupins superfamily p...		Lus10021980 [exp]	7.5	0.9817

Compare expression of checked genes

Lus10016991 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.