Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51680 201 / 2e-63 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 196 / 6e-62 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 192 / 3e-60 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 190 / 8e-60 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 185 / 7e-58 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 185 / 7e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 182 / 5e-56 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 180 / 8e-56 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 175 / 4e-54 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 172 / 9e-53 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021319 [exp] 476 / 3e-172 AT1G52340 229 / 1e-74 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014227 [exp] 270 / 5e-91 AT3G51680 231 / 3e-75 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014228 [exp] 268 / 3e-90 AT3G26770 227 / 3e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029369 [exp] 265 / 5e-89 AT3G51680 226 / 3e-73 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014226 [exp] 261 / 3e-87 AT3G51680 230 / 1e-74 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016991 [exp] 259 / 1e-86 AT2G47140 238 / 2e-78 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016995 [exp] 258 / 4e-86 AT3G51680 243 / 7e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021314 [exp] 256 / 2e-85 AT3G51680 238 / 6e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021318 [exp] 256 / 3e-85 AT3G51680 238 / 9e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G206800 [exp] 331 / 7e-115 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 281 / 2e-95 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 279 / 3e-94 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 276 / 2e-93 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 276 / 4e-93 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 272 / 8e-92 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206700 [exp] 265 / 6e-89 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 247 / 5e-82 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 243 / 3e-80 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 241 / 1e-79 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10016996 pacid=23173021 polypeptide=Lus10016996 locus=Lus10016996.g ID=Lus10016996.BGIv1.0 annot-version=v1.0 ATGAACTCCCAGTACTCTTCTTCTCCAATACTCCCGCCCGTTGCCCAAAGGCTGGCAGGCAAAGTGGCCATAATCACAGGAGGCGCCAGCGGCATCGGCG AATCCACAGCCAGGCTCTTCGTCAAGCACGGCGCAAGAGTCGTAATCGCCGACCTCCAAGACGAACTAGGCCATTCTCTCTGCCGCCAACTCAACAGCAA CACCAACAACGACGTCGCTTCCTACGTACACTGTGACGTCACCCAGGACTCCCACGTCCGAAACGCGGTTGACTTTGCCGTTTCGACGTACGGGAAGTTA GACATCATGTACAACAACGCTGGCATCACAGGCCACGTGGCATCAGCGCATGCGGTCAACGACGGGGACGACGACTTCAGGCGCGTGATAGATGTGAACG TGTACGGCGGGTACCTGGGGGCGAAGCACGCGGGGCGTGTGATGGTGGCTCGCAGAAAGGGAGGGGTGATACTCTTCACGGGGAGCGTGGCGTCGGCCAC GTGCGGGGAGTCACCGCACGCGTACACGGCGTCGAAGCACGCGGTGGTGGGGCTGATGAGGAACCTGTGCGTGGAGCTAGGGAAGCACGGGGTGAGGGTG AACTGTATCTCGCCGTGCGCGATGGCAACGCCACTGCTGAGGGAGGCGATGGGTGGGGTTGCGAAGGAGGTGGTGGAAGGGGTGATATGTGAGTCGGCGG TGTTGAAAGGGGTGGTTCCCGACCCAAGTGACGTGGCGGCGGCGGCTGTTTACCTGGGGAGTGACGAGGCGAGGTTCGTGAGTGGGGGGGATTGA
AA sequence Show only first row Show all	>Lus10016996 pacid=23173021 polypeptide=Lus10016996 locus=Lus10016996.g ID=Lus10016996.BGIv1.0 annot-version=v1.0 MNSQYSSSPILPPVAQRLAGKVAIITGGASGIGESTARLFVKHGARVVIADLQDELGHSLCRQLNSNTNNDVASYVHCDVTQDSHVRNAVDFAVSTYGKL DIMYNNAGITGHVASAHAVNDGDDDFRRVIDVNVYGGYLGAKHAGRVMVARRKGGVILFTGSVASATCGESPHAYTASKHAVVGLMRNLCVELGKHGVRV NCISPCAMATPLLREAMGGVAKEVVEGVICESAVLKGVVPDPSDVAAAAVYLGSDEARFVSGGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016996 [exp]	0	1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10039303 [exp]	2.2	0.9032
AT3G24050	GATA	GATA1	GATA transcription factor 1 (....		Lus10031464 [exp]	3.9	0.8265
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Lus10010101 [exp]	4.5	0.8858
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10019871 [exp]	6.0	0.8733
AT2G31980		AtCYS2	PHYTOCYSTATIN 2 (.1)		Lus10041257 [exp]	6.3	0.8387
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10041313 [exp]	8.1	0.8429
AT4G02100			Heat shock protein DnaJ with t...		Lus10002438 [exp]	8.5	0.8058
AT1G32990		PRPL11	plastid ribosomal protein l11 ...		Lus10017349 [exp]	14.5	0.8595
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10030814 [exp]	15.2	0.7886
AT1G14410		WHY1, ATWHY1, P...	A. THALIANA WHIRLY 1, ssDNA-bi...		Lus10036723 [exp]	15.7	0.8397

Compare expression of checked genes

Lus10016996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.