Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52340 238 / 6e-78 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 220 / 2e-71 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 219 / 9e-70 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 214 / 7e-69 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 213 / 8e-68 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 213 / 9e-68 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 210 / 7e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 208 / 1e-66 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G29260 207 / 2e-66 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 202 / 1e-64 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021320 [exp] 512 / 0 AT1G52340 246 / 2e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021312 [exp] 261 / 3e-87 AT3G51680 238 / 8e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021318 [exp] 261 / 6e-87 AT3G51680 238 / 9e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016991 [exp] 261 / 7e-87 AT2G47140 238 / 2e-78 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021314 [exp] 259 / 3e-86 AT3G51680 238 / 6e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021313 [exp] 258 / 5e-86 AT3G26770 232 / 3e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029369 [exp] 258 / 6e-86 AT3G51680 226 / 3e-73 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014226 [exp] 258 / 7e-86 AT3G51680 230 / 1e-74 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014227 [exp] 257 / 1e-85 AT3G51680 231 / 3e-75 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G074000 [exp] 403 / 3e-143 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 397 / 7e-141 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 295 / 2e-100 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G200100 [exp] 288 / 6e-98 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 284 / 2e-96 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 276 / 3e-93 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 276 / 7e-93 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 271 / 3e-91 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 270 / 8e-91 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 267 / 2e-89 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10016997 pacid=23172939 polypeptide=Lus10016997 locus=Lus10016997.g ID=Lus10016997.BGIv1.0 annot-version=v1.0 ATGGCGGCAACACCCTTCATCTCTTCCATAGCAAAGCGGCTAGAAGGCAAAGTAGCGCTAATCACGGGCGGTGCCAGCGGGATCGGAGAATTCACGGCCA GGGTGTTCGCCCACCACGGCGCCAAAGTGGTCATCGCCGACGTCCAAGATGACCTCGGCCAATCGGTCGTGGCCGACAACTTAGGCAGGTCCATTTCCAC TTTCGTCCACTGCGACGTCACAGACGAATCCCAGGTCAAATCCGCCGTCGACGCCGCGGTATCCACCTACGGGAAGCTGGACATCATGTTCAACAACGCC GGGATCGCCGACCCGAACAAGCCCCGTATCGTCGATATCGAGAAATCGGACTTTGACCGGGTCCTGAGCATCAACGTCACGGGAGTTTTCCTCGGGACGA AGCACGCCGCCAGAGTCATGATCCCTCGGCGCGCCGGCTGCATCATCTCCACGGCGAGCATCAGCTCGGCAATCGGCGGCGCGGCTTCCCATGCATACTG CTGCGCGAAGCACGCGGTGCTCGGGTTGACCCGGAATGCTGCGGTGGAGCTGGGTCAGTTCGGGATTCGGGTCAACTGTTTGGCGCCTTACGCGATGGCG ACCCCACTTGCGACCAAGTTCGTGGGGCTGCCTGACGAGCAGCTTGAGGCGGCGATGAACTCGATGGCGAATTTGAAAGGAGTGACGCTTAAGACGGAGG ACGTGGCGAATGCGGCTCTGTTTCTGGCTAGCGAGGAGGCTAGATACGTGAGTGGGCATAACTTGTTTGTGGATGGTGCGTTTAGTGTTCATAATTCTGC GCTTCAGGTGTTCAGGTACCCAGAAGAAGAGAAATAA
AA sequence Show only first row Show all	>Lus10016997 pacid=23172939 polypeptide=Lus10016997 locus=Lus10016997.g ID=Lus10016997.BGIv1.0 annot-version=v1.0 MAATPFISSIAKRLEGKVALITGGASGIGEFTARVFAHHGAKVVIADVQDDLGQSVVADNLGRSISTFVHCDVTDESQVKSAVDAAVSTYGKLDIMFNNA GIADPNKPRIVDIEKSDFDRVLSINVTGVFLGTKHAARVMIPRRAGCIISTASISSAIGGAASHAYCCAKHAVLGLTRNAAVELGQFGIRVNCLAPYAMA TPLATKFVGLPDEQLEAAMNSMANLKGVTLKTEDVANAALFLASEEARYVSGHNLFVDGAFSVHNSALQVFRYPEEEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10016997 [exp]	0	1
AT3G29635			HXXXD-type acyl-transferase fa...		Lus10005362 [exp]	5.4	0.9447
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10010700 [exp]	9.3	0.8973
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10037552 [exp]	9.5	0.9256
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10015188 [exp]	11.0	0.9279
AT4G35030			Protein kinase superfamily pro...		Lus10013566 [exp]	14.8	0.9236
AT3G01850			Aldolase-type TIM barrel famil...		Lus10035219 [exp]	19.1	0.9229
AT2G26930		CMK, CMEK, ISPE...	PIGMENT DEFECTIVE 277, 4-\(cyt...		Lus10036098 [exp]	20.1	0.9242
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021102 [exp]	21.1	0.9235
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016469 [exp]	22.1	0.9205
AT5G16180		CRS1, ATCRS1	ARABIDOPSIS ORTHOLOG OF MAIZE ...		Lus10017618 [exp]	25.5	0.9135

Compare expression of checked genes

Lus10016997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.