Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27170 144 / 5e-39 SMC3, TTN7 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) AT3G26770 113 / 2e-29 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 108 / 2e-27 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 100 / 7e-25 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 98 / 4e-24 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 92 / 9e-22 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 91 / 2e-21 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 90 / 4e-21 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47130 88 / 2e-20 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 86 / 1e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016991 [exp] 248 / 3e-82 AT2G47140 238 / 2e-78 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021314 [exp] 248 / 3e-82 AT3G51680 238 / 6e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021313 [exp] 243 / 3e-80 AT3G26770 232 / 3e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021312 [exp] 242 / 9e-80 AT3G51680 238 / 8e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016995 [exp] 238 / 2e-78 AT3G51680 243 / 7e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021318 [exp] 236 / 2e-77 AT3G51680 238 / 9e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10005262 [exp] 229 / 8e-75 AT3G51680 236 / 8e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014228 [exp] 173 / 7e-53 AT3G26770 227 / 3e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014227 [exp] 167 / 2e-50 AT3G51680 231 / 3e-75 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G073900 [exp] 194 / 4e-61 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 192 / 3e-60 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 176 / 3e-54 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 169 / 3e-51 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 168 / 5e-51 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 157 / 7e-47 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 152 / 6e-45 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206700 [exp] 150 / 7e-44 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 149 / 1e-43 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G155200 [exp] 149 / 1e-40 AT2G27170 1665 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase CL0023 [flax] [poplar] P-loop_NTPase PF02463 [flax] [poplar] SMC_N RecF/RecN/SMC N terminal domain
Representative CDS sequence Show only first row Show all	>Lus10017012 pacid=23173010 polypeptide=Lus10017012 locus=Lus10017012.g ID=Lus10017012.BGIv1.0 annot-version=v1.0 ATGAAGCAGCTGTCCGGGGGCCAGAAAACTCTAGTTGCCATGGCATTGATATTTGCTATACAGCAATGTGATCCTGCTCCTTTCTATCTGTTCGACGAAA TCGATGCAACACTGGATCCTCAGTATAGAACAACTGTTGGGAATTTGATACATTCACTGACATACATGGCGAATACGCAATTCATAACAACAACATTCAG GTCGGAGCGGGTGAGAGTCGCGGACAAGATATACGGAGTGAGACATAAGAGCAGGTTCTTCATTCAATCTTTCTCATGGGATCGAACGCGTGCGGCATTT GTTTCATCATCCACCGGTATTACAGCTCGAAGGCTCGAAGGCAAAGTGGCGATTATAACCGGTGGAGCAAGTGGAATAGGCGCCAGCACTGCTAGGCTAT TCGTCCAGTATGGCGCCAAAGTCTTGATCGCCGACGTTCAGGACAAACTCAGAGAATCCCTTGCCCGAGAACTCGGCCCATCGGGAATCGTCTCCTTCGT CCATTGCAACATGACGAGCGATTCTGACGTTCAGAATGCAGTCGACACTGCAGTGTCCAGGTACGGGCAACTGGACATCATGTACAGCAATGCCGGAATC GGGGGCAACCTCGACACCATGATCTTAAACCCGTACAATGGGGACTTCAAGAGGGTTGTAGAGATCAACCTTTTTGGATCTTTCTTGGGAGCCAAACATG CTATCTGGGTGATGATTCCGGAGAGGAAGGGTTGCATACTGTTCACCGGTAGCGTTGCAGCTTCGATAAGCGGGGAATTATCATACGTGTACAAGGCATG A
AA sequence Show only first row Show all	>Lus10017012 pacid=23173010 polypeptide=Lus10017012 locus=Lus10017012.g ID=Lus10017012.BGIv1.0 annot-version=v1.0 MKQLSGGQKTLVAMALIFAIQQCDPAPFYLFDEIDATLDPQYRTTVGNLIHSLTYMANTQFITTTFRSERVRVADKIYGVRHKSRFFIQSFSWDRTRAAF VSSSTGITARRLEGKVAIITGGASGIGASTARLFVQYGAKVLIADVQDKLRESLARELGPSGIVSFVHCNMTSDSDVQNAVDTAVSRYGQLDIMYSNAGI GGNLDTMILNPYNGDFKRVVEINLFGSFLGAKHAIWVMIPERKGCILFTGSVAASISGELSYVYKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10017012 [exp]	0	1
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10021394 [exp]	3.2	0.9751
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10038200 [exp]	3.7	0.9803
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10010545 [exp]	13.6	0.9701
AT5G43440			2-oxoglutarate (2OG) and Fe(II...		Lus10022192 [exp]	15.0	0.9739
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10005107 [exp]	18.9	0.9697
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028898 [exp]	19.1	0.9733
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10002357 [exp]	21.0	0.9731
AT1G14550			Peroxidase superfamily protein...		Lus10024208 [exp]	23.9	0.9635
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10003147 [exp]	28.5	0.9600
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10025902 [exp]	32.1	0.9681

Compare expression of checked genes

Lus10017012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.