Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06490 254 / 4e-84 MYB BOS1, AtMYB108 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) AT1G48000 246 / 4e-82 MYB ATMYB112 myb domain protein 112 (.1) AT5G49620 247 / 2e-81 MYB ATMYB78 myb domain protein 78 (.1.2) AT2G47190 231 / 1e-75 MYB AtMYB2 myb domain protein 2 (.1) AT1G68320 222 / 6e-72 MYB BW62C, BW62B, AtMYB62 myb domain protein 62 (.1) AT1G25340 210 / 3e-67 MYB ATMYB116 myb domain protein 116 (.1.2) AT3G27810 194 / 1e-61 MYB AtMYB3, ATMYB21 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) AT5G40350 188 / 9e-60 MYB ATMYB24 myb domain protein 24 (.1) AT3G01530 186 / 6e-59 MYB ATMYB57 myb domain protein 57 (.1) AT3G24310 159 / 8e-48 MYB MYB305, ATMYB71 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037818 [exp] 300 / 7e-102 AT3G06490 273 / 4e-90 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Lus10038062 [exp] 226 / 1e-73 AT2G47190 226 / 1e-73 myb domain protein 2 (.1) Lus10009996 [exp] 221 / 1e-71 AT2G47190 221 / 3e-71 myb domain protein 2 (.1) Lus10041435 [exp] 219 / 5e-70 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10034338 [exp] 217 / 2e-69 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10009037 [exp] 201 / 2e-64 AT1G68320 231 / 1e-75 myb domain protein 62 (.1) Lus10022259 [exp] 201 / 2e-64 AT3G27810 243 / 3e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Lus10032129 [exp] 196 / 8e-63 AT5G40350 221 / 2e-73 myb domain protein 24 (.1) Lus10014557 [exp] 196 / 1e-62 AT5G40350 224 / 1e-74 myb domain protein 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G101400 [exp] 284 / 7e-96 AT3G06490 278 / 2e-92 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Potri.010G149900 [exp] 283 / 2e-95 AT3G06490 281 / 9e-94 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Potri.014G117000 [exp] 224 / 1e-72 AT5G49620 233 / 1e-75 myb domain protein 78 (.1.2) Potri.008G122100 [exp] 224 / 3e-72 AT1G68320 274 / 1e-91 myb domain protein 62 (.1) Potri.015G046200 [exp] 223 / 8e-72 AT1G25340 241 / 2e-78 myb domain protein 116 (.1.2) Potri.012G055600 [exp] 222 / 2e-71 AT1G68320 244 / 1e-79 myb domain protein 62 (.1) Potri.002G191800 [exp] 221 / 3e-71 AT5G49620 231 / 1e-74 myb domain protein 78 (.1.2) Potri.010G123000 [exp] 216 / 3e-69 AT1G68320 268 / 4e-89 myb domain protein 62 (.1) Potri.017G071500 [exp] 191 / 4e-61 AT3G27810 233 / 2e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.001G346600 [exp] 188 / 8e-60 AT3G27810 242 / 1e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10017096 pacid=23167388 polypeptide=Lus10017096 locus=Lus10017096.g ID=Lus10017096.BGIv1.0 annot-version=v1.0 ATGGATGCTAATTACGGATCGACAGGCGGAGGCGGCAGCATCAATAACAGCCAGCAGCGTAGCTCCTCCTCATCATCCTCTTCTTCCGGCGGCGGCGCGG AGGAGGAGATGAGCGAGCTCCGGCGAGGACCGTGGACCGTCGAGGAAGATTTCAAGCTGATGAATTACATTGCCACCAACGGGGAAGGCCGCTGGAACTC TCTTGCCCGTTGCGCCGGGTTGAAAAGAACGGGGAAGAGCTGCAGGCTGAGGTGGCTGAACTATCTCCGCCCCGACGTCCGACGTGGCAACATCACGCTG GAGGAACAGCTCATGATCCTCGACCTCCATTCGCGGTGGGGGAACCGGTGGTCCAAGATTGCGCAGCACTTGCCAGGTAGGACCGACAACGAGATCAAGA ACTACTGGAGGACACGTGTCCAGAAGCACGCCAAGCAGCTCAAGTGTGACGTCAACAGCAAGCAGTTCAAGGACACCATGCGCTACCTTTGGATGCCCAG GCTCATCGAAAGAATCCAAGCTGCTACTACTACTACTACTACTCTACCTTCCACCTCTGCTTCCCCCGCCGCGCCNNGCGGCGGGCCCGCCTGCCGCTCC CTTGGCTGCCGTGGACGGACACATGACGGCGGCGGTGCCAAGTGGCAACTCCAGCGTGGCGGGGTCGACGTCGGCGGACTCGTTTGGTGCACAGGTGGTT TCGCCCATGTCGGACATGACGGATTACTACAACGTTCCAACGGGCGGTGTAAATCTCGGGTCGGACCCGAACCCGACGGCGGCGGAATATGA
AA sequence Show only first row Show all	>Lus10017096 pacid=23167388 polypeptide=Lus10017096 locus=Lus10017096.g ID=Lus10017096.BGIv1.0 annot-version=v1.0 MDANYGSTGGGGSINNSQQRSSSSSSSSSGGGAEEEMSELRRGPWTVEEDFKLMNYIATNGEGRWNSLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITL EEQLMILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLIERIQAATTTTTTLPSTSASPAAXXGGPACRS LGCRGRTHDGGGAKWQLQRGGVDVGGLVWCTGGFAHVGHDGLLQRSNGRCKSRVGPEPDGGGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06490	MYB	BOS1, AtMYB108	BOTRYTIS-SUSCEPTIBLE1, myb dom...		Lus10017096 [exp]	0	1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10027585 [exp]	4.2	0.9359
AT5G57260		CYP71B10	"cytochrome P450, family 71, s...		Lus10030189 [exp]	4.4	0.9361
AT4G30230			unknown protein		Lus10041416 [exp]	12.4	0.9045
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10015188 [exp]	14.0	0.9261
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10011013 [exp]	14.2	0.8659
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10011184 [exp]	16.5	0.8673
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10012226 [exp]	17.3	0.8924
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10030927 [exp]	20.0	0.9141
AT3G53990			Adenine nucleotide alpha hydro...		Lus10017207 [exp]	22.4	0.9016
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033743 [exp]	22.9	0.9163

Compare expression of checked genes

Lus10017096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.