Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17430 568 / 0 Nucleotide-sugar transporter family protein (.1) AT1G48230 548 / 0 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G53660 291 / 1e-96 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G32390 280 / 5e-92 Nucleotide-sugar transporter family protein (.1) AT5G11230 278 / 2e-91 Nucleotide-sugar transporter family protein (.1) AT5G25400 277 / 5e-91 Nucleotide-sugar transporter family protein (.1) AT2G25520 276 / 1e-90 Drug/metabolite transporter superfamily protein (.1) AT3G14410 274 / 8e-90 Nucleotide/sugar transporter family protein (.1) AT1G21870 107 / 5e-26 GONST5 golgi nucleotide sugar transporter 5 (.1) AT5G05820 100 / 5e-24 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018339 [exp] 688 / 0 AT3G17430 615 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10002904 [exp] 293 / 3e-97 AT4G32390 632 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10002023 [exp] 292 / 8e-97 AT4G32390 631 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10016923 [exp] 274 / 1e-89 AT3G14410 496 / 1e-177 Nucleotide/sugar transporter family protein (.1) Lus10025645 [exp] 107 / 4e-26 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1) Lus10042700 [exp] 99 / 5e-23 AT1G77610 602 / 0.0 EamA-like transporter family protein (.1) Lus10028255 [exp] 97 / 1e-22 AT3G11320 523 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10029663 [exp] 99 / 2e-22 AT1G77610 547 / 0.0 EamA-like transporter family protein (.1) Lus10009878 [exp] 95 / 8e-22 AT3G11320 548 / 0.0 Nucleotide-sugar transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G001700 [exp] 587 / 0 AT3G17430 589 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.008G214300 [exp] 578 / 0 AT3G17430 569 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.001G394500 [exp] 294 / 1e-97 AT3G14410 496 / 5e-178 Nucleotide/sugar transporter family protein (.1) Potri.018G028900 [exp] 283 / 3e-93 AT4G32390 568 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.006G252500 [exp] 274 / 1e-89 AT4G32390 537 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.002G084500 [exp] 102 / 2e-24 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1) Potri.005G177200 [exp] 97 / 2e-22 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1) Potri.010G194100 [exp] 94 / 1e-21 AT3G11320 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.016G043200 [exp] 87 / 3e-19 AT5G04160 512 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.008G063400 [exp] 87 / 4e-19 AT3G11320 566 / 0.0 Nucleotide-sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10017115 pacid=23167433 polypeptide=Lus10017115 locus=Lus10017115.g ID=Lus10017115.BGIv1.0 annot-version=v1.0 ATGGTGATGATAAGCAAGCCTCTCGTCTTCACTTACTTCTACCTCCTGATCTACATCATCCTCTCTTCCGGATGGGTTCTTTCGCCCAAGTATTTCAACT TTCCGTTCCCTATCACTCTGACTATGATTCACATGGCTTTCTCCGGCCTCGTTTCCTTCTTCCTCGTCCGGGTTTTCAAGGTTGTGACTCCTGTGAAAAT GACTTTCGAAATCTATGCCACTTGTGTCATACCCATTAGTGCCTTCTTCGCTGCTAGTCTCTGGTTTGGTAACACTGCGTACTTGTATATTTCAGTGGCT TTCATCCAAATGCTTAAGGCTTTGATGCCAGTGGCAACTTTTATCATGGCTGTACTGTGTGGCACTGATAAAGCAAGGTGTGACGTGTTCTTGAACATGT TGCTGGTCAGTGTTGGAGTTGTCGTTTCCTCGTATGGGGAAATCCATTTCAATGTGGTTGGCACAGTTTACCAGGTTACAGGCATCTTTGCCGAAGCTCT TAGACTAGTGTTAACTCAAGTTCTTCTACAGAAGAAGGGCTTGACCCTGAACCCTATCACCAGCTTATATTACATTGCTCCATGCAGCTTCGTATTTCTC TTTGCGCCTTGGTATTTACTAGAGAAACCAGCAATGGAAGTATCACAGATTCAGTTCAATTTCTGGATATTCTTCTCGAACGCACTTTGTGCACTAGCAT TGAACTTCTCGATATTCTTGGTTATTGGAAGAACTGGAGCAGTGACCATCAGGGTTGCTGGTGTGCTTAAAGACTGGATACTTATAGCCCTTTCAACTGT CATATTCCCGGAGTCTACTATAACGGGGCTGAACATAATCGGTTATGCGATCGCTCTTTGTGGTGTGGTAATGTACAACTACTTGAAGGTTAGGGATGTT CGTGCATCGTCGCAACTCCCTGAAACTGCTCCTGACAGATTGACAAAGGATTGGAAACTGGAGAAGAAGTCATCTGATATATTTGTGCCAAATGATGGCA GTGGAGGAGCAGCAGCAGCAAATGTATCATCATCCTCCGATGGGTTGGGTGTGGATGAGGAAGTACCTCTAATAGCATCGTCGAGATTGTCTCATATTGG ACGTTCGCAGTCTAGTAACCACAATGTAGGATGA
AA sequence Show only first row Show all	>Lus10017115 pacid=23167433 polypeptide=Lus10017115 locus=Lus10017115.g ID=Lus10017115.BGIv1.0 annot-version=v1.0 MVMISKPLVFTYFYLLIYIILSSGWVLSPKYFNFPFPITLTMIHMAFSGLVSFFLVRVFKVVTPVKMTFEIYATCVIPISAFFAASLWFGNTAYLYISVA FIQMLKALMPVATFIMAVLCGTDKARCDVFLNMLLVSVGVVVSSYGEIHFNVVGTVYQVTGIFAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFL FAPWYLLEKPAMEVSQIQFNFWIFFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYLKVRDV RASSQLPETAPDRLTKDWKLEKKSSDIFVPNDGSGGAAAANVSSSSDGLGVDEEVPLIASSRLSHIGRSQSSNHNVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17430			Nucleotide-sugar transporter f...		Lus10017115 [exp]	0	1
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Lus10029779 [exp]	3.5	0.8514
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10037309 [exp]	5.3	0.8621
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10017851 [exp]	5.7	0.8488
AT5G63770		ATDGK2	diacylglycerol kinase 2 (.1.2)		Lus10010896 [exp]	6.7	0.8414
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Lus10031348 [exp]	7.9	0.8665
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10011157 [exp]	11.3	0.8352
AT5G50390		EMB3141	EMBRYO DEFECTIVE 3141, Pentatr...		Lus10013389 [exp]	12.7	0.8368
AT4G17910			transferases, transferring acy...		Lus10001270 [exp]	12.8	0.7946
AT2G19880			Nucleotide-diphospho-sugar tra...		Lus10034973 [exp]	13.3	0.8091
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Lus10023359 [exp]	19.7	0.8299

Compare expression of checked genes

Lus10017115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.