Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12800 392 / 5e-138 SDRB, DECR short-chain dehydrogenase-reductase B (.1) AT2G07640 181 / 5e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29260 113 / 5e-29 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G05260 101 / 7e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G54870 100 / 2e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 99 / 2e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G63380 99 / 4e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29150 98 / 8e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G05530 96 / 5e-23 SDRA, IBR1 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) AT1G24360 96 / 1e-22 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018323 [exp] 603 / 0 AT3G12800 395 / 4e-139 short-chain dehydrogenase-reductase B (.1) Lus10031746 [exp] 419 / 9e-149 AT3G12800 463 / 4e-166 short-chain dehydrogenase-reductase B (.1) Lus10031170 [exp] 417 / 9e-148 AT3G12800 454 / 8e-163 short-chain dehydrogenase-reductase B (.1) Lus10001560 [exp] 111 / 7e-28 AT5G06060 350 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029937 [exp] 108 / 1e-27 AT1G54870 503 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024360 [exp] 107 / 3e-27 AT5G06060 287 / 7e-98 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010874 [exp] 107 / 4e-27 AT5G06060 295 / 8e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016178 [exp] 105 / 2e-26 AT2G47140 210 / 2e-67 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040737 [exp] 104 / 3e-26 AT2G29350 332 / 3e-115 senescence-associated gene 13 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G125900 [exp] 483 / 5e-174 AT3G12800 421 / 9e-150 short-chain dehydrogenase-reductase B (.1) Potri.006G025400 [exp] 392 / 4e-138 AT3G12800 427 / 3e-152 short-chain dehydrogenase-reductase B (.1) Potri.010G142600 [exp] 111 / 7e-29 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.008G149201 [exp] 108 / 1e-27 AT1G54870 378 / 3e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039300 [exp] 107 / 3e-27 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039500 [exp] 105 / 2e-26 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089700 [exp] 104 / 3e-26 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 104 / 3e-26 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.008G178700 [exp] 102 / 4e-25 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G056100 [exp] 101 / 9e-25 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10017129 pacid=23167471 polypeptide=Lus10017129 locus=Lus10017129.g ID=Lus10017129.BGIv1.0 annot-version=v1.0 ATGGCGGCGGAGTCACCGTTCAAGCCGGAGATACTCAAAGGCAAGGTAGCTTTGCTAACCGGCGGCGCGTCAGGGATCGGCTACGGAATATCCCTCGAGC TAGGCAAGCACGGTGCCTCCGTCGCAGTCATGGGCCGCCGGAAACACGTTGTCGACTCCGCCGTCTCGTCTCTCCAATCACTCGGCATCCCCGCGATTGG ATTCGAGGGAGACGTTCGGAAGAGAGAGGACGCAGCTAGGGCGGTTGAAGGGACGGCGAAGCATTTCGGGAGACTTGATATCCTGGTAAACGCCGCAGCT GGGAATTTCCTCACTCCGGCGGAACATCTCTCGCCTAATGGCTTCAAAACAGTGATGGACATCGATTCAGTGGGAACATTCACGATGTGTCACGAAGCAC TGAAGTATCTGAAGAAAGGCGGAGAAGGCAAAGACCCGGCTGAAGTCGGTGGAACCATTATCAACATTAGCGCAACTCTGCATTATACTGCTACTTGGTA CCAAATCCACGTCTCTGCTGCCAAGGCAGCAGTGGATAGCATAACAAGGAGTCTGGCATTAGAGTGGGGGACAGACTACGACATAAAAGTGAACGGGATC GCTCCAGGACCAATTCAGGACACTGCTGGTGCCAGCAAGCTTGTCGGGTTCAACGAAGAGCTGGTTAAGAAAACTCTTGGGGCGGACCCTCTGTTTCGAT ATGGGGACAAATGGGATATTGCAATGGCAGTCCTCTACCTAGTGTCTAATGCAGGGAAATTCGTGAACGGGACAACAATGGCAGTAGATGGAGGGCAGTG GCTGAGCAAGCCTCGCCACATCGGGAAAGAAGAAGTGAAGCTGATATCGAAAGTTGTCGAGAGAAGGTCCAGAGATGCAGCAGTCGGGGTCCCTAAGGGC AAGCTGTGA
AA sequence Show only first row Show all	>Lus10017129 pacid=23167471 polypeptide=Lus10017129 locus=Lus10017129.g ID=Lus10017129.BGIv1.0 annot-version=v1.0 MAAESPFKPEILKGKVALLTGGASGIGYGISLELGKHGASVAVMGRRKHVVDSAVSSLQSLGIPAIGFEGDVRKREDAARAVEGTAKHFGRLDILVNAAA GNFLTPAEHLSPNGFKTVMDIDSVGTFTMCHEALKYLKKGGEGKDPAEVGGTIINISATLHYTATWYQIHVSAAKAAVDSITRSLALEWGTDYDIKVNGI APGPIQDTAGASKLVGFNEELVKKTLGADPLFRYGDKWDIAMAVLYLVSNAGKFVNGTTMAVDGGQWLSKPRHIGKEEVKLISKVVERRSRDAAVGVPKG KL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10017129 [exp]	0	1
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Lus10009944 [exp]	3.0	0.9156
AT1G30090			Galactose oxidase/kelch repeat...		Lus10042824 [exp]	5.5	0.9009
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10032574 [exp]	5.9	0.8979
AT2G15760			Protein of unknown function (D...		Lus10027912 [exp]	9.2	0.8547
AT1G12550		HPR3	hydroxypyruvate reductase 3, D...		Lus10006708 [exp]	9.7	0.9042
AT3G09010			Protein kinase superfamily pro...		Lus10011193 [exp]	10.8	0.8778
AT5G06280			unknown protein		Lus10016973 [exp]	15.0	0.8690
AT4G25150			HAD superfamily, subfamily III...		Lus10007939 [exp]	15.2	0.8630
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Lus10008963 [exp]	16.2	0.8807
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10024270 [exp]	18.5	0.8932

Compare expression of checked genes

Lus10017129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.