Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 374 / 2e-111 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27180 356 / 5e-103 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G17680 336 / 5e-97 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 335 / 3e-96 transmembrane receptors;ATP binding (.1.2) AT1G31540 298 / 1e-84 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G69550 300 / 3e-84 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G46260 295 / 4e-83 disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G63870 285 / 2e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41540 284 / 2e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16890 286 / 7e-80 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037406 [exp] 1442 / 0 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020238 [exp] 1344 / 0 AT1G69550 391 / 7e-117 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10004115 [exp] 1285 / 0 AT5G27970 689 / 0.0 ARM repeat superfamily protein (.1.2) Lus10035674 [exp] 1253 / 0 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10042714 [exp] 1249 / 0 AT5G36930 411 / 3e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10029628 [exp] 1050 / 0 AT1G27180 462 / 1e-138 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10010574 [exp] 992 / 0 AT5G36930 397 / 4e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004911 [exp] 963 / 0 AT1G27170 387 / 5e-115 transmembrane receptors;ATP binding (.1.2) Lus10026961 [exp] 957 / 0 AT5G36930 420 / 2e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T005501 [exp] 439 / 7e-136 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 437 / 7e-135 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 434 / 5e-134 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003942 [exp] 426 / 4e-131 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001600 [exp] 424 / 3e-130 AT5G36930 721 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 406 / 4e-125 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.012G053200 [exp] 412 / 5e-124 AT1G27170 1187 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.T002066 [exp] 404 / 2e-122 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 401 / 2e-121 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 399 / 8e-121 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10017143 pacid=23167456 polypeptide=Lus10017143 locus=Lus10017143.g ID=Lus10017143.BGIv1.0 annot-version=v1.0 ATGGAGCAAATGAACATGTGGTCCAGCGAAGGAACAACAGTCTCCAATGATTCTCCAGAATCGCAAACATCAACCGCAGAACTTCAATCTGTTGTCAGTG CTTTGGAGTACGAGGTTTTCTTGAGCTTTAGAGGGCCTGATGTTCGCAAAAGCTTTGCGGACTTCCTCTACAACTATTTGCTCCGTTCCAAGATCCGCAC CTTTAGGGACGAGGAAGAGCTTCGGAAGGGGGAGGTTATTGCACCTTCTCTAATCCAGGCTATTACGGAATCAAAGATTTACATTCCAATTTTATCAAAG AGCTATGCTTCTAGCAAATGGTGCCTCCAGGAACTGGCTAAGATGGTGGAGTGTTGCAGGAAAGGCAAGGAACACATCATATTGCCCATTTTCTATTTCA TGGACCCTAGAGATGTCCGGCGTCAAGCGGGGCCTTACAAGGATGCATTTGAACAACATAGTAAGAAACATGACGCCGTAATCATACAAGAATGGCGGGC AGCTCTCCAAGAAGTTGGACAAATGAAAGGATGGCATGTTACCGAAATAGACGGACAGGGAGCTGTTATAGATGAACTTTTTTCTAAGGTTGAGTTGCAT CTGAGGAGTAACTACACTTTAGTGACTGAGGAGTTGGTTGGCATTGATTCTCATGTGCAAGAAGTGATGAGATTGTTGAATTTAGACTCTAGACATGGGA AAATTGTTGGGATTCAAGGCATTGGCGGCATGGGTAAAACTACTATAGCCAAAGCAGTCTACGACAATATCTGCAGAAACTTCAATCGTTGCTGTTTCGT AGAGAATACACGAGAACTATTGTTGAAAGACAATGGTATTGTGTCTTTACAGAATAAGTTCATCTCTAGCATTTTGAGGGATGATGTTCATGTTAAAGAT GCTAGTGAAGGGGTCAACATGATTAGAGAGAGGGTCTGCAAACATAAAGTCTTGGTTGTTCTTGATGATGTAGATGATAAGTTTGAATTCGACCAAATAC TAGGGAAGTTAGGATATTTTTCCTCAGAAAGTAGATTCATCATTACAACAAGAGACAAAAGAGTACTAGAGCTCCTTCCAGAATGCAAACTGTATGAACC CCAAGAAATGAGTTATGATCATTCTGTTCAACTGTTTAGCAGACATGCCTTTGGGAGGAATTACATTCCGGAAGGTTATGGTGCTCTATGTGATGAATTT GTAAAAGTTGCAGCAAAACTTCCTTTGGCTCTTAAGGTCATAGGGTCTCTCTTGTTCCGTAGGGATAAACAATTTTGGGAAGAAAAGTTGATGCAACTTA AAGAAGTACCTGGTACTATTGATGAGCTGCAGCTTAGATTGAAGATTAGCTATAATGAGTTGACCCATAATGAAAAGCAAATCTTTCTCGACATAGCCTG CTTTTTCATCGGAGAGGATAAAGAATTGCCCGTCCATATGTGGAGTGATTGTAAATTTTATCCCGAAAGTGGGATTAGGACTCTTGTTCTTAGATCCTTG ATAAAAATTGATGAGATCAATCGGTTCTGGATGCATGATCATCTCAGAGATCTTGGTAGAGCCATTGTTACCGGGGAAGATGCTGAATGTCCATCCAAGC GCAGCAGGATATGGTCTACCAAGGATGCCATGAACATGCTGGAAAATGGGGAGGCAACTGATCGAGTCGAAATGCTTAGGGTTAACATGCCATGGGGATA TCAAAGTCATAGCAAACATTTTGAGAAGTTGTCAAGGTTAAGGTACCTTGACATGAGCGTTACTTTGCTGGCCGGGGAGTTCAGTGAAATACTTCCTAAT GTCCGATGGCTTAGGCTGTCTGGTTGCTGGAATTTCTCCTCTAATTTCAACTTTAAGAATGTTGTAATTCTCGAATTACCAGATTGCGAAGTAGCTGATA ATTGGAGGGGATGGAAGAGAGTTAAGGTGGCGCAGAAGCTGAAAGTTATAAATCTACGTAACTGCTCTAAGTTCAAAAGAGTGCCGGACCTTTCCCAATG TGCAAGCCTAGAGTTGATAGATCTGACTCTGTGTGAAGAGGTGAAGGGGGAACTCAACATCAGTAATTTCATGAATCTGAAAGTGGTCAGGCTTCGTGAA ACTGAAATATCATTAACAGGTGACATGGGAAAGCTTCAAAAACTCGAAGAGATTAAAACGGGGAAATTGGCCTGGGGAGCTGAAAAAGAAGTACCTATGC TCCCCACAAGCTTAAAACGCCTAACCATCTCGTCCCCTCGGGTCCCCAATCTTCTGGAGCTTAAAGACCTGGAGGAGCTTTACATTGAGAACTGTGGCGA CACTCCTGAAATTCCTGGGGATGTATGGCAGCTGACTAAGTTGAAGACTTTGAAGATGGTCAACTGCATCTGCCAAGGTAGCCTGTTGCTAAATCCGGAT GGTACCCTTCCATCGTCTCTAACCTGCCTTGTCGTCGACTGGAGCGAGGGTTTGACTAGGCTGCCGAATCTTGCAAATCTGAGTAATTTGATGGAACTAC GACTGATTCACTTCAGGGCAAGTGAAATCCATGGTCTTGGGAAGCTTAGAGTGTTGGAAGCACTCGAAATATCCGGATCCATGAGTTTGAATCACCTCCA TGGCCTCGATAATCTCATGCACCTGAAAGAGCTGATCCTCAAAAGTTGTGGACTAAATGGTCTTCCCAATCTATCGAATCTGTGTATCGCTGGGTGGAGA CTGTTCCCCAAATCCATAGAACTTGGGGGATTAAAATCGTTACAATCCCTAGAAATGAAGGCCTGCAAGTCTCTTAAGAGGTTGTCTATCCTCTCAAGTC TTGAAAATTTGGAGACGCTTGATGTTAGTGGCTGCATACGGTTGGTTGATGTCCCAGGCCTCGACAGATTGGGATCGTTGCAGAAGCTGAACATGTCCAA CTGTTGGTCGCTCGAGGAGTTACCTAATCTATCCGGCATGAAGAGTCTGAACGTTTTAGACGTCAGCGAATGCTTTAACTTGGTTGGGGCTATTGGTCTG GAGAAACTGGAGTCGTTGAAAGAGTTAAACATGGGTCATTGCAGGTCAATTAAGGAGCTGCCTGATATGTCCGGTCTTAAGAACCTGTTGAGATTAAATC TCAAGGGATGCACAAATCTGAAGACTGTTAAAGGACTCAAGAAACTGAAGAGATTGTGGTTTGTGCGTATGGAGAAAAGGTTACTAGTGAAGCATCCTTT GCAAGTGGCTGTATGGGCTGGGAGGGAATTGGAACTATCATCTGCTGTCACATACGCTTTGCTTCTTATGGTTTAG
AA sequence Show only first row Show all	>Lus10017143 pacid=23167456 polypeptide=Lus10017143 locus=Lus10017143.g ID=Lus10017143.BGIv1.0 annot-version=v1.0 MEQMNMWSSEGTTVSNDSPESQTSTAELQSVVSALEYEVFLSFRGPDVRKSFADFLYNYLLRSKIRTFRDEEELRKGEVIAPSLIQAITESKIYIPILSK SYASSKWCLQELAKMVECCRKGKEHIILPIFYFMDPRDVRRQAGPYKDAFEQHSKKHDAVIIQEWRAALQEVGQMKGWHVTEIDGQGAVIDELFSKVELH LRSNYTLVTEELVGIDSHVQEVMRLLNLDSRHGKIVGIQGIGGMGKTTIAKAVYDNICRNFNRCCFVENTRELLLKDNGIVSLQNKFISSILRDDVHVKD ASEGVNMIRERVCKHKVLVVLDDVDDKFEFDQILGKLGYFSSESRFIITTRDKRVLELLPECKLYEPQEMSYDHSVQLFSRHAFGRNYIPEGYGALCDEF VKVAAKLPLALKVIGSLLFRRDKQFWEEKLMQLKEVPGTIDELQLRLKISYNELTHNEKQIFLDIACFFIGEDKELPVHMWSDCKFYPESGIRTLVLRSL IKIDEINRFWMHDHLRDLGRAIVTGEDAECPSKRSRIWSTKDAMNMLENGEATDRVEMLRVNMPWGYQSHSKHFEKLSRLRYLDMSVTLLAGEFSEILPN VRWLRLSGCWNFSSNFNFKNVVILELPDCEVADNWRGWKRVKVAQKLKVINLRNCSKFKRVPDLSQCASLELIDLTLCEEVKGELNISNFMNLKVVRLRE TEISLTGDMGKLQKLEEIKTGKLAWGAEKEVPMLPTSLKRLTISSPRVPNLLELKDLEELYIENCGDTPEIPGDVWQLTKLKTLKMVNCICQGSLLLNPD GTLPSSLTCLVVDWSEGLTRLPNLANLSNLMELRLIHFRASEIHGLGKLRVLEALEISGSMSLNHLHGLDNLMHLKELILKSCGLNGLPNLSNLCIAGWR LFPKSIELGGLKSLQSLEMKACKSLKRLSILSSLENLETLDVSGCIRLVDVPGLDRLGSLQKLNMSNCWSLEELPNLSGMKSLNVLDVSECFNLVGAIGL EKLESLKELNMGHCRSIKELPDMSGLKNLLRLNLKGCTNLKTVKGLKKLKRLWFVRMEKRLLVKHPLQVAVWAGRELELSSAVTYALLLMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27180			disease resistance protein (TI...		Lus10017143 [exp]	0	1
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10040335 [exp]	1.4	0.9208
AT3G57550		GK-2, AGK2	GUANYLATE KINAS 2, guanylate k...		Lus10011328 [exp]	2.2	0.9114
AT5G36930			Disease resistance protein (TI...		Lus10037406 [exp]	4.2	0.8935
AT1G74770			zinc ion binding (.1)		Lus10042188 [exp]	15.0	0.8806
AT4G39830			Cupredoxin superfamily protein...		Lus10016808 [exp]	16.5	0.9141
AT1G04985			unknown protein		Lus10015157 [exp]	17.3	0.8736
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10003460 [exp]	21.1	0.8576
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10039493 [exp]	23.0	0.9021
AT5G57010			calmodulin-binding family prot...		Lus10013526 [exp]	24.4	0.9166
AT3G25610			ATPase E1-E2 type family prote...		Lus10034404 [exp]	30.9	0.9134

Compare expression of checked genes

Lus10017143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.