Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11900 499 / 4e-176 ANT1 aromatic and neutral transporter 1 (.1) AT2G42005 240 / 4e-75 Transmembrane amino acid transporter family protein (.1) AT4G38250 239 / 2e-74 Transmembrane amino acid transporter family protein (.1) AT5G65990 213 / 2e-64 Transmembrane amino acid transporter family protein (.1) AT5G15240 118 / 4e-29 Transmembrane amino acid transporter family protein (.1.2) AT5G02170 104 / 4e-24 Transmembrane amino acid transporter family protein (.1.2) AT2G41190 104 / 6e-24 Transmembrane amino acid transporter family protein (.1) AT3G09330 102 / 2e-23 Transmembrane amino acid transporter family protein (.1) AT3G28960 100 / 7e-23 Transmembrane amino acid transporter family protein (.1) AT3G09340 100 / 1e-22 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021089 [exp] 809 / 0 AT3G11900 501 / 2e-176 aromatic and neutral transporter 1 (.1) Lus10001390 [exp] 236 / 4e-73 AT2G42005 581 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10022995 [exp] 235 / 6e-73 AT2G42005 580 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10026549 [exp] 226 / 1e-69 AT2G42005 548 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10012824 [exp] 109 / 3e-26 AT5G15240 425 / 3e-147 Transmembrane amino acid transporter family protein (.1.2) Lus10005239 [exp] 105 / 2e-24 AT5G15240 509 / 4e-180 Transmembrane amino acid transporter family protein (.1.2) Lus10030683 [exp] 97 / 1e-21 AT5G15240 510 / 2e-180 Transmembrane amino acid transporter family protein (.1.2) Lus10013835 [exp] 91 / 1e-21 AT2G42005 178 / 2e-55 Transmembrane amino acid transporter family protein (.1) Lus10030469 [exp] 92 / 6e-20 AT5G15240 405 / 4e-139 Transmembrane amino acid transporter family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G064500 [exp] 530 / 0 AT3G11900 521 / 0.0 aromatic and neutral transporter 1 (.1) Potri.005G102300 [exp] 239 / 1e-74 AT4G38250 539 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G206800 [exp] 225 / 3e-69 AT2G42005 592 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.009G167900 [exp] 223 / 3e-68 AT4G38250 583 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.017G083700 [exp] 100 / 7e-23 AT3G28960 456 / 2e-159 Transmembrane amino acid transporter family protein (.1) Potri.010G169000 [exp] 91 / 7e-20 AT3G28960 381 / 2e-130 Transmembrane amino acid transporter family protein (.1) Potri.008G086500 [exp] 91 / 1e-19 AT3G28960 411 / 4e-142 Transmembrane amino acid transporter family protein (.1) Potri.014G146700 [exp] 89 / 5e-19 AT5G16740 430 / 3e-148 Transmembrane amino acid transporter family protein (.1) Potri.017G083500 [exp] 89 / 7e-19 AT5G15240 448 / 4e-156 Transmembrane amino acid transporter family protein (.1.2) Potri.016G100300 [exp] 87 / 4e-18 AT5G02180 587 / 0.0 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10017224 pacid=23165745 polypeptide=Lus10017224 locus=Lus10017224.g ID=Lus10017224.BGIv1.0 annot-version=v1.0 ATGGAGGAAGGACTCAAACCCTCTGAAGTTCCCCTGCTCCCCGGCCACCACCGAGACTCCGGAACGGCTTCCACTGTTCAAACCATCGGCAACATCATTG TCTCCATCGTCGGCACCGGCATACTCGGCCTCCCTTATGCCCTCCGCGTCGCCGGCTGGCTTTCCGGGTCGTTCGCCATCGTCCTCGCCGGAATCTCCAC TTACTACTGCATGATTCTTCTCGTTCAATGCAGGAATAAAGTATCGTCATCGGAATTGACCACAGAGACAACGACATACGGCGATCTGGGTCAGAGGGCG TTGGGGAAAACAGGGCGATACTTGACAGAATCATTCATCTTGATTTCCCAATGTGGAGGGGCTGTTGCATATTTGCTCTTCATTGGTCAGAACCTTTCCT CAGTGCTCAACTTCAATGGCTTCACAACCTCCACGTTCATATTTATGCTGGTCCCAATCGAGGTGGCCCTGTGCTGGATAGGATCATTGTCTGCACTAGC TCCCTTCAGCATTTTCGCCGATATGTGCAACCTGTTGGCAATGGCGATAGTGGTGAAAGAAGATGCTCAGAAGCTCTTCGGTGGTGGGGATTTTAAGTTC AGTGATAGGCAGGCCATCTCATCTGATCCTGCAGGATTGCCGTTTGCTCTGGGAATGGCTGTGTTCTGCTTTGAAGGGTTTGGGATGACACTGGCACTTG AGCAGTCGATGAAAGAGAGGGGGAAATTCCGCAGTGTTCTTACTAAGGCAGTTACTGGGATTGCTTCCTTGTATATTGTGTTTGCATTTTTCGGTTACAT GGCATATGGTGATGAGACTAGAGACATCATTACTCTCAACTTGACTCAGAACTGGTCCAACATTGCTGTTCAGATCGGAATGTGCACTGGACTGGTGTTC ACCTTCCCGATCATGGTGCACCCGATCAACGAGATCGTGGAAGGGAAGCTGAGAAAGATGCGGTGCTTCCAGAAGATGGATAACGACGATCAGGGCTACC TGGCTTGGATCAGGAAGTCTGGAATTTACGTGTTCAGGGCCGTTCTGATCACAGGTTTGGCGCTCGTAGCATCATTCGTACCTGGGTTCGGGCAGCTCTC ATCGATTGTGGGGAGCAGCGTCTGTGCATGCATCTCGTTCGTGCTGCCGGCTCTGTTTCACTTGAAACTATTGGGTCCGTCCCTGCCGGTTTGGAGAAAA GCCCTGGATTGCTTCGTCATGGTTTGTGGGGTTATGTTTGCGGTTTATGGCACTATCAGTACCATCGTTAGTGTCTGA
AA sequence Show only first row Show all	>Lus10017224 pacid=23165745 polypeptide=Lus10017224 locus=Lus10017224.g ID=Lus10017224.BGIv1.0 annot-version=v1.0 MEEGLKPSEVPLLPGHHRDSGTASTVQTIGNIIVSIVGTGILGLPYALRVAGWLSGSFAIVLAGISTYYCMILLVQCRNKVSSSELTTETTTYGDLGQRA LGKTGRYLTESFILISQCGGAVAYLLFIGQNLSSVLNFNGFTTSTFIFMLVPIEVALCWIGSLSALAPFSIFADMCNLLAMAIVVKEDAQKLFGGGDFKF SDRQAISSDPAGLPFALGMAVFCFEGFGMTLALEQSMKERGKFRSVLTKAVTGIASLYIVFAFFGYMAYGDETRDIITLNLTQNWSNIAVQIGMCTGLVF TFPIMVHPINEIVEGKLRKMRCFQKMDNDDQGYLAWIRKSGIYVFRAVLITGLALVASFVPGFGQLSSIVGSSVCACISFVLPALFHLKLLGPSLPVWRK ALDCFVMVCGVMFAVYGTISTIVSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11900		ANT1	aromatic and neutral transport...		Lus10017224 [exp]	0	1
AT5G23280	TCP	TCP7	TCP family transcription facto...		Lus10010177 [exp]	2.2	0.8505
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10025231 [exp]	4.2	0.8343
AT2G33700			Protein phosphatase 2C family ...		Lus10012244 [exp]	5.7	0.8360
					Lus10013062 [exp]	6.9	0.8004
					Lus10040269 [exp]	9.4	0.8164
AT4G33940			RING/U-box superfamily protein...		Lus10014366 [exp]	10.7	0.8015
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10042195 [exp]	19.3	0.7908
AT3G57800	bHLH	bHLH060	basic helix-loop-helix (bHLH) ...		Lus10040506 [exp]	19.4	0.7954
AT5G19580			glyoxal oxidase-related protei...		Lus10043230 [exp]	20.2	0.7950
AT1G74160			unknown protein		Lus10034677 [exp]	22.4	0.7776

Compare expression of checked genes

Lus10017224 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.