Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18110 245 / 1e-80 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) AT1G30230 238 / 3e-77 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1.2) AT5G19510 182 / 9e-56 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) AT5G12110 175 / 4e-53 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1) AT1G75790 109 / 3e-26 SKS18 SKU5 similar 18 (.1) AT4G22010 79 / 5e-16 SKS4 SKU5 similar 4 (.1) AT1G76160 79 / 7e-16 SKS5 SKU5 similar 5 (.1) AT4G28090 79 / 9e-16 SKS10 SKU5 similar 10 (.1) AT1G41830 76 / 5e-15 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1) AT1G21860 76 / 5e-15 SKS7 SKU5 similar 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013555 [exp] 320 / 5e-110 AT2G18110 313 / 3e-109 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Lus10037618 [exp] 288 / 2e-97 AT2G18110 319 / 2e-111 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Lus10026784 [exp] 155 / 2e-45 AT5G12110 297 / 6e-103 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1) Lus10036101 [exp] 155 / 2e-45 AT5G12110 296 / 1e-102 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1) Lus10015545 [exp] 81 / 2e-16 AT4G22010 889 / 0.0 SKU5 similar 4 (.1) Lus10020022 [exp] 81 / 2e-16 AT4G22010 895 / 0.0 SKU5 similar 4 (.1) Lus10037941 [exp] 79 / 1e-15 AT4G12420 519 / 2e-179 Cupredoxin superfamily protein (.1.2) Lus10023539 [exp] 77 / 3e-15 AT4G12420 496 / 4e-170 Cupredoxin superfamily protein (.1.2) Lus10021238 [exp] 77 / 4e-15 AT1G76160 892 / 0.0 SKU5 similar 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G094200 [exp] 246 / 1e-80 AT2G18110 299 / 1e-103 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Potri.012G096400 [exp] 245 / 2e-80 AT2G18110 275 / 4e-94 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Potri.009G018600 [exp] 156 / 5e-46 AT2G18110 158 / 3e-48 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Potri.001G224700 [exp] 150 / 1e-43 AT2G18110 153 / 3e-46 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Potri.002G021000 [exp] 116 / 1e-28 AT1G75790 670 / 0.0 SKU5 similar 18 (.1) Potri.005G247700 [exp] 77 / 4e-15 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.002G013700 [exp] 77 / 4e-15 AT1G76160 902 / 0.0 SKU5 similar 5 (.1) Potri.004G010100 [exp] 76 / 6e-15 AT4G22010 844 / 0.0 SKU5 similar 4 (.1) Potri.004G180500 [exp] 76 / 7e-15 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.008G032100 [exp] 76 / 7e-15 AT5G48450 461 / 3e-156 SKU5 similar 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] PF00736 [flax] [poplar] EF1_GNE EF-1 guanine nucleotide exchange domain
Representative CDS sequence Show only first row Show all	>Lus10017261 pacid=23165795 polypeptide=Lus10017261 locus=Lus10017261.g ID=Lus10017261.BGIv1.0 annot-version=v1.0 ATGCCAACGATCGATGAGTGGACTAATTATTTCGACAATGGTGGGAATGCAGAATGGGGGCAGGGTCGTGGAATGAGAGCAGTGATAAAGCAACATATAA CTTGGTGGATGCAGTTTCGAGATCAACCGTTCAGGTCGGTGTATCCTCGAGGGTGGACAGCAATACTGGTGATGTTGGACAACAGAGGGATATGGAACTT GAGGTCACAAAATGCAGAAAAATGGTATCTGGGGCAGGAGCTGTATCTGAGAGTTAAGGGCAGTGGAGCTGAAGATCCAATGAGCATTCCTGAAAGAGAC GAATCTCCAATCCCTCAAAATGCCATTTTATGTGGCCGAAAGTCTTTTGTACTTTTGCTAGCAATGGCGATTGCATTCCAAGGTCTCAACACCCCAGCTG GCTTGAAGAAGCTCGATGAGTACCTTCTCACTCGCAGTTACATCAGTGGGTACCAAGCTTCAAAAGACGATGTCGTTGTCTTCTCAGCAATCCCTTGCCT CCCACCATCTGATATGGTGAGCGTTACTAGGTGGTTCAAGCACATCGACGCTCTTCTAAGGATATCTGGTGTTTCTGGAGAAGGGTCTGGAGTTTCTATC GAGGGATTTGCTCCTGTTGCAACTCCTCCTACTGGTGACACCAAGGCGGCTGCTGCTGCTGCGGAGGATGACGATGATGATGTGGATCTGTTTGGTGAAG AGACTGAAGAGGAAAAGAAGGCTGCAGAAGAGCGAAAAGCCTCTGTAAAGGCTTCTTCCAAGAAGAAAGAATCTGGAAAGTCGTCTGTTTTGATGGATGT TAAGCCATGGGACGATGAAACCGACATGAAAAAGCTGGAGGAGGCAGTCAGAGGCGTTGAGATGGAAGGGCTTTTCTGGGGAGCATCTAAGCTGGTTGCA GTCGGATACGGTATCAAGAAGCTGCAGATCATGCTTACCATTGTGGACGATCTAGTCTCGGTGGACACCCTCATTGAAGAACGCCTGACTGAAGAGCCTA TCAATGAGTATGTCCAGAGCTGTGACATTGTGGCCTTCAACAAGATATGTGAGTCCTCCTAA
AA sequence Show only first row Show all	>Lus10017261 pacid=23165795 polypeptide=Lus10017261 locus=Lus10017261.g ID=Lus10017261.BGIv1.0 annot-version=v1.0 MPTIDEWTNYFDNGGNAEWGQGRGMRAVIKQHITWWMQFRDQPFRSVYPRGWTAILVMLDNRGIWNLRSQNAEKWYLGQELYLRVKGSGAEDPMSIPERD ESPIPQNAILCGRKSFVLLLAMAIAFQGLNTPAGLKKLDEYLLTRSYISGYQASKDDVVVFSAIPCLPPSDMVSVTRWFKHIDALLRISGVSGEGSGVSI EGFAPVATPPTGDTKAAAAAAEDDDDDVDLFGEETEEEKKAAEERKASVKASSKKKESGKSSVLMDVKPWDDETDMKKLEEAVRGVEMEGLFWGASKLVA VGYGIKKLQIMLTIVDDLVSVDTLIEERLTEEPINEYVQSCDIVAFNKICESS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18110			Translation elongation factor...		Lus10017261 [exp]	0	1
AT2G18110			Translation elongation factor...		Lus10013555 [exp]	5.2	0.7815
AT5G02960			Ribosomal protein S12/S23 fami...		Lus10026479 [exp]	7.3	0.7878
AT3G13230			RNA-binding KH domain-containi...		Lus10008345 [exp]	7.7	0.7574
AT5G02960			Ribosomal protein S12/S23 fami...		Lus10019910 [exp]	9.4	0.7819
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10029681 [exp]	10.2	0.6381
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Lus10023825 [exp]	17.9	0.7573
AT1G07920			GTP binding Elongation factor ...		Lus10019918 [exp]	24.0	0.7351
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10007376 [exp]	27.0	0.7485
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10035401 [exp]	29.7	0.7452
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015063 [exp]	30.5	0.7337

Compare expression of checked genes

Lus10017261 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.