Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75790 457 / 2e-157 SKS18 SKU5 similar 18 (.1) AT4G22010 358 / 1e-118 SKS4 SKU5 similar 4 (.1) AT4G37160 358 / 1e-118 SKS15 SKU5 similar 15 (.1) AT4G12420 357 / 1e-117 SKU5 Cupredoxin superfamily protein (.1.2) AT3G13390 355 / 3e-117 SKS11 SKU5 similar 11 (.1) AT5G66920 353 / 1e-116 SKS17 SKU5 similar 17 (.1) AT1G55570 352 / 5e-116 SKS12 SKU5 similar 12 (.1) AT4G38420 351 / 5e-116 SKS9 SKU5 similar 9 (.1) AT5G51480 350 / 5e-115 SKS2 SKU5 similar 2 (.1) AT5G48450 351 / 6e-115 SKS3 SKU5 similar 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013556 [exp] 504 / 5e-178 AT1G75790 446 / 4e-154 SKU5 similar 18 (.1) Lus10022465 [exp] 358 / 1e-118 AT5G66920 829 / 0.0 SKU5 similar 17 (.1) Lus10005649 [exp] 358 / 2e-118 AT1G76160 889 / 0.0 SKU5 similar 5 (.1) Lus10015545 [exp] 357 / 4e-118 AT4G22010 889 / 0.0 SKU5 similar 4 (.1) Lus10020022 [exp] 357 / 5e-118 AT4G22010 895 / 0.0 SKU5 similar 4 (.1) Lus10030045 [exp] 355 / 2e-117 AT1G76160 796 / 0.0 SKU5 similar 5 (.1) Lus10031722 [exp] 355 / 3e-117 AT4G25240 897 / 0.0 SKU5 similar 1 (.1) Lus10028921 [exp] 355 / 5e-117 AT4G12420 975 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10016770 [exp] 360 / 1e-116 AT5G66920 837 / 0.0 SKU5 similar 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G021000 [exp] 507 / 6e-177 AT1G75790 670 / 0.0 SKU5 similar 18 (.1) Potri.004G180500 [exp] 370 / 1e-123 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.003G112700 [exp] 371 / 3e-123 AT4G12420 932 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.005G247700 [exp] 368 / 1e-122 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.001G120300 [exp] 369 / 3e-122 AT4G12420 930 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.002G013700 [exp] 367 / 3e-122 AT1G76160 902 / 0.0 SKU5 similar 5 (.1) Potri.014G154500 [exp] 365 / 2e-121 AT4G22010 780 / 0.0 SKU5 similar 4 (.1) Potri.014G177700 [exp] 362 / 9e-120 AT5G48450 885 / 0.0 SKU5 similar 3 (.1) Potri.002G227600 [exp] 357 / 4e-118 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.004G010100 [exp] 355 / 2e-117 AT4G22010 844 / 0.0 SKU5 similar 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10017262 pacid=23165868 polypeptide=Lus10017262 locus=Lus10017262.g ID=Lus10017262.BGIv1.0 annot-version=v1.0 ATGGAGTTGTCGCCGCCATTACTAAGGTCTTGTTACCTAGTTGTTTCGTCATGGTTTTTCATCGTCATCATCAACACCGTCACGGTACAAGCCGAATCAG GCTCGGTGTCTTATGATTGGAACGTCTCTCTTTCGACTCGCGCTCCTCTCGGTGTCGAGAAGCAAGTGATTGTGATCAACGACCAGTTTCCTGGACCGTT GGTGAACGCCACCACCAACGATGTCGTCAATGTTAATGTCTATAACAATTTGGCCGAACCATTTCTGATCACATGGAACGGAGTGCAACTGAGGAGGAAT TCATGGCAAGATGGAGTTCAAGGAACAAACTGTCCAATTCAGCCTGGCCAAAACTGGACTTACAGTTTCCAGATTAAGGATCAAATTGGAAGCTTTTTCT ACTTCCCGTCACTTCTCCTTCAGAAAACCGGCGGCGGGTACGGCGCAGTTCGGGTGAATAACCGATGCGGAATCCCAATTCCGTTCCCGCAGCCGTTTCA AGACATTGACTTGCTGATTGGAGATTGGTACAACGCACATCATTGGAATCTGAGAGGGTTACTTGAGCAAGGCAAGCATTTACCTCATCCTGATGGCATT CTCATAAATGGACACGGACCCAATCGATTCACTCTTGGGTTTCAACCCGGGGCTACATATATGCTAAGGATTTCGAACGTGGGAACTCGAACATCGCTCA ACTTCAGAATTCAGGACCATCCATTGCTGCTGGTGGAGACTGAAGGGTCTTACACAGTTAAGAAGTATTACAATAGTTTGGACATCCATGTGGGTCAATC CTACTCTGTCTTGGTCACAGCAAAGAGTCGAAACATTCATGGAAAGTCGTACAACATGTTCGCTAGCTCTCGATTCACCGCGTCTAGGATATTTGGAGTT GGAGTGGTCTACTATCCCGATTCGAATCGGCCACCATCTGCTCCTCTTCCTTCACGTCCATCTGCATTCGATTACCATTTCTCCATTAAACAAGCTCGTT CCATCAAGTGGGACTTGGAAGTGGGAGCTGCGAGGACAAACCCGCAAGGTTCATACCACTACGGGAGCATCAACATATCGAGAACACTAGTCCTGGAGAA CAATCTCATCGTGGACGGATCAAACAAGCTTCGATACACCGTGAACGGGGTTTCTTTTGTGCACCCGGATACGCCATTAAAGCTAGCCGATCGCTTCAAA ATGTTCGATGAGCTGAAGACCGTGGTGGTTCCACCAATCCCTTACGTTCCACAGAAGAAGATGCAACAGTTAGGGACTTCAGTTGTTGATGTGAAATGGC GTGACTTCTACCACTTGGTTTTCCAGAACCCACTCCCTTACCTCCAGACTTGGCATCTTGATGGCTACAACTTTTTCGTCGTTGGGTGA
AA sequence Show only first row Show all	>Lus10017262 pacid=23165868 polypeptide=Lus10017262 locus=Lus10017262.g ID=Lus10017262.BGIv1.0 annot-version=v1.0 MELSPPLLRSCYLVVSSWFFIVIINTVTVQAESGSVSYDWNVSLSTRAPLGVEKQVIVINDQFPGPLVNATTNDVVNVNVYNNLAEPFLITWNGVQLRRN SWQDGVQGTNCPIQPGQNWTYSFQIKDQIGSFFYFPSLLLQKTGGGYGAVRVNNRCGIPIPFPQPFQDIDLLIGDWYNAHHWNLRGLLEQGKHLPHPDGI LINGHGPNRFTLGFQPGATYMLRISNVGTRTSLNFRIQDHPLLLVETEGSYTVKKYYNSLDIHVGQSYSVLVTAKSRNIHGKSYNMFASSRFTASRIFGV GVVYYPDSNRPPSAPLPSRPSAFDYHFSIKQARSIKWDLEVGAARTNPQGSYHYGSINISRTLVLENNLIVDGSNKLRYTVNGVSFVHPDTPLKLADRFK MFDELKTVVVPPIPYVPQKKMQQLGTSVVDVKWRDFYHLVFQNPLPYLQTWHLDGYNFFVVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75790		SKS18	SKU5 similar 18 (.1)		Lus10017262 [exp]	0	1

Compare expression of checked genes

Lus10017262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.