Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24050 426 / 3e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G64590 400 / 5e-140 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 270 / 1e-88 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G37540 231 / 5e-74 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G02540 216 / 4e-68 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23420 208 / 5e-65 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G23430 207 / 1e-64 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G11410 206 / 3e-64 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G53100 81 / 6e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G27760 78 / 5e-16 FEY3, FEY FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003204 [exp] 586 / 0 AT4G24050 499 / 3e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10042088 [exp] 274 / 5e-90 AT5G50130 460 / 3e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10024415 [exp] 224 / 4e-71 AT5G02540 471 / 4e-168 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10018092 [exp] 224 / 2e-70 AT5G50130 403 / 1e-140 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10023762 [exp] 222 / 4e-70 AT2G37540 429 / 8e-152 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10028781 [exp] 215 / 2e-67 AT4G11410 470 / 3e-168 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035480 [exp] 213 / 8e-67 AT4G11410 444 / 5e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035479 [exp] 213 / 3e-66 AT4G11410 444 / 2e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014975 [exp] 212 / 6e-66 AT4G23430 442 / 8e-157 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G086900 [exp] 431 / 6e-152 AT4G24050 441 / 2e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G144100 [exp] 421 / 4e-148 AT4G24050 397 / 9e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G081102 [exp] 272 / 8e-90 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.T124508 [exp] 272 / 8e-90 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.012G087800 [exp] 271 / 2e-89 AT5G50130 426 / 4e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G083900 [exp] 231 / 7e-74 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128800 [exp] 223 / 8e-71 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.015G146600 [exp] 223 / 8e-71 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143600 [exp] 221 / 2e-69 AT4G23430 401 / 2e-140 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G103000 [exp] 209 / 1e-65 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10017308 pacid=23140257 polypeptide=Lus10017308 locus=Lus10017308.g ID=Lus10017308.BGIv1.0 annot-version=v1.0 ATGCTGCAAACAGTGAAATACCTGATCGGCGCACGCGGAGCCAGCGGATACGGCTCCAGATCCACGGCGGAGGAAGTCACGGAAAACTGCAGCGATCTCC GCTCCCTCACCGCCATCATCACCGGTGCGACGTCGGGGATCGGAGCGGAGACGGCCAGAGTGCTGGCGAAGAGAGGCGCCACGGTGGTGATGCCGGCGAG GAGTATGAAGGCTGCCGAGGATACGAAGGCGCGTATTCTGTCGGAGTGTCCTGATGCTGCGATCATCGTCATGGCGCTCGATCTCAGCTCTCTCCGTTCC GTCAGAAGCTTCGTCTCCGAGTTCGAATCGCTCGATTTGAATCTCAATCTCCTCATAAATAACGCCGGGAAATTCGCGCACCAGCATGCTATATCGGAGG ACGGAATCGAGATGTCGTTCGCGACTAACTACCTAGGCCATTTTCTGCTGACGAATCTATTACTGGAGAAGATGAAGGAAACAGCGGAGGAAACGGGGGT GCAGGGGAGAATAGTGAACGTGTCATCGGCGATTCACGGGTGGTTCGCTGGCGATATGCTGCAGTACCTGGAAGAAATTTCTGGGCAGAAATGTCCTCAT TACGATGCTACACGTGCATACGCTCTCTCCAAGCTCGCCAACGTCCTCCATACCAAACACCTTGCTCTTAGGCTCAAGGAAACGGAAGCCAACGTAACAG TGAACTGCGTACACCCGGGGATCGTTCGGACGAGGCTGACGAGAGAAAGAGAAGGGTTCGCAACGGACGCGGCCTTCTTCTTAGCATCGAAGCTACTGAA AACAATCCCGCAGGCAGCCGCGACGACTCTTTACGTGGCGACGCATCCGAGGGTTGGGAAAGCATCGGGGAAGTATTTCGCGGATTGCAACGAAGCAGGA GTGTCCAAGTTGGGATCCAGCTCAAGGGAAGCAGCTCGGCTATGGTCTGCATCCGAAATCATGGTTTCTTCTCCTGCGTCCACGAACTCAAAAGCAGCAG CAGCTTTTCATGCACTTTTGCTTTAG
AA sequence Show only first row Show all	>Lus10017308 pacid=23140257 polypeptide=Lus10017308 locus=Lus10017308.g ID=Lus10017308.BGIv1.0 annot-version=v1.0 MLQTVKYLIGARGASGYGSRSTAEEVTENCSDLRSLTAIITGATSGIGAETARVLAKRGATVVMPARSMKAAEDTKARILSECPDAAIIVMALDLSSLRS VRSFVSEFESLDLNLNLLINNAGKFAHQHAISEDGIEMSFATNYLGHFLLTNLLLEKMKETAEETGVQGRIVNVSSAIHGWFAGDMLQYLEEISGQKCPH YDATRAYALSKLANVLHTKHLALRLKETEANVTVNCVHPGIVRTRLTREREGFATDAAFFLASKLLKTIPQAAATTLYVATHPRVGKASGKYFADCNEAG VSKLGSSSREAARLWSASEIMVSSPASTNSKAAAAFHALLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24050			NAD(P)-binding Rossmann-fold s...		Lus10017308 [exp]	0	1
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Lus10014164 [exp]	1.0	0.7936
AT1G71692	MADS	XAL1, AGL12	XAANTAL1, AGAMOUS-like 12 (.1)		Lus10001277 [exp]	3.2	0.6984
AT4G24050			NAD(P)-binding Rossmann-fold s...		Lus10003204 [exp]	5.5	0.7030
AT1G07710			Ankyrin repeat family protein ...		Lus10005432 [exp]	5.7	0.7591
AT3G11690			unknown protein		Lus10029349 [exp]	6.0	0.6988
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10043350 [exp]	15.5	0.6747
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10028546 [exp]	15.9	0.6805
AT5G05820			Nucleotide-sugar transporter f...		Lus10016446 [exp]	18.0	0.6378
					Lus10009611 [exp]	22.0	0.6348
AT3G15810			Protein of unknown function (D...		Lus10038097 [exp]	23.5	0.6843

Compare expression of checked genes

Lus10017308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.