Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58340 57 / 8e-09 MYB myb-like HTH transcriptional regulator family protein (.1.2) AT1G15720 54 / 6e-08 MYB TRFL5 TRF-like 5 (.1) AT1G17520 54 / 7e-08 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1) AT1G17460 52 / 4e-07 MYB TRFL3 TRF-like 3 (.1.2) AT1G72650 51 / 8e-07 MYB TRFL6 TRF-like 6 (.1.2) AT1G49950 50 / 9e-07 MYB ATTRB1, TRB1 telomere repeat binding factor 1 (.1.2.3) AT1G72740 50 / 9e-07 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT5G67580 48 / 5e-06 MYB ATTBP3, TRB2, ATTRB2 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT3G49850 47 / 7e-06 MYB TBP2, TRB3, ATTRB3 TELOMERE-BINDING PROTEIN 2, telomere repeat binding factor 3 (.1) AT5G59430 44 / 0.0001 ATTRP1 TELOMERE REPEAT BINDING PROTEIN 1, telomeric repeat binding protein 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017320 [exp] 744 / 0 AT5G58340 76 / 8e-14 myb-like HTH transcriptional regulator family protein (.1.2) Lus10001494 [exp] 172 / 2e-20 ND 40 / 0.004 Lus10027773 [exp] 87 / 2e-18 ND 56 / 7e-08 Lus10002926 [exp] 76 / 1e-14 AT2G25320 2345 / 0.0 TRAF-like family protein (.1) Lus10042209 [exp] 66 / 2e-11 AT1G15720 70 / 1e-12 TRF-like 5 (.1) Lus10024200 [exp] 65 / 4e-11 AT1G15720 65 / 5e-11 TRF-like 5 (.1) Lus10020771 [exp] 64 / 1e-10 AT5G58340 70 / 1e-12 myb-like HTH transcriptional regulator family protein (.1.2) Lus10007348 [exp] 60 / 1e-09 AT3G23730 355 / 2e-121 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10011546 [exp] 50 / 1e-06 AT5G67580 199 / 2e-62 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154500 [exp] 67 / 1e-11 AT5G58340 88 / 4e-18 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G054401 [exp] 55 / 4e-08 AT1G68030 104 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.016G053300 [exp] 53 / 3e-07 AT1G68030 115 / 7e-28 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G147400 [exp] 50 / 1e-06 AT1G17520 209 / 2e-66 Homeodomain-like/winged-helix DNA-binding family protein (.1) Potri.003G063700 [exp] 50 / 1e-06 AT1G72650 333 / 7e-106 TRF-like 6 (.1.2) Potri.006G126300 [exp] 49 / 3e-06 AT2G37025 120 / 2e-29 TRF-like 8 (.1.2) Potri.018G066300 [exp] 49 / 3e-06 AT1G72740 186 / 6e-58 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.010G202400 [exp] 49 / 6e-06 AT3G12560 461 / 1e-154 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) Potri.009G087000 [exp] 47 / 7e-06 AT1G49950 277 / 5e-93 telomere repeat binding factor 1 (.1.2.3) Potri.001G170200 [exp] 48 / 8e-06 AT1G72650 399 / 5e-131 TRF-like 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10017319 pacid=23140211 polypeptide=Lus10017319 locus=Lus10017319.g ID=Lus10017319.BGIv1.0 annot-version=v1.0 ATGACAAGGAAAAACACTGCTGGCAGCACACATGATTCATTGACTGCTGAAGCTGTTTCGAAATCCGGTTTGATGACAAGGAAAAACACTGCTGGCAGCA CACATGATTCATTGACTGCTGAAGCTGTTTCGAAATCCGGTTTGATGACAAGGAAAAACACTGCTGGCAGCACACATGATTCATTGACTGCTGAAGCTGT TTCGAAATCCGGTTTGATGACAAGGAAAAACACTGCTGGCAGCACACATGATTCATTGACTGCTGAAGCTGTTTCGAAATCCGGTTTGATGACAAGGAAA AACACTGCTGGCAGCACACATGATTCATTGACTGCTGAAGCTGTTTCGAAATCCGGTTTGATGACAAGGAAAAACACTGCTGGCAGCACACATGATTCAT TGACTGCTGAAGCTGTTTCGAAATCCGGTTTGATGACAAGGAAAAACACTGCTGGCAGCACACATGATTCATTGACTGCTGAAGCTGTTTCGAAATCCGG TTTGATGACAAGGAAAAACACTGCTGGCAGCACACATGATTCATTGACTGCTGAAGCTGTTTCGAAATCCGGTTTGATGACAAGGAAAAACACTGCTGGC AGCACACATGATTCATTGACTGCTGAAGCTGTTTCGAAATCCGGTTTGATGACAAGGAAAAACACTGCTGGTAGCACACATGATTCATCGACTGCTGAAG CACCACAAAACATTTCTCACCCAGCTAGTGTGCTTGGCATCCCAGCTGAAGTAGGTAGACCTACACCTTCCTCCTCTCAGAAGGATTGCCATGAGAGCCA GCAGGCCGATAAAAACAAGGCAGTTGGTGAGTCATCCAGGCATCCAAATGTTCCAATGGTTGATGCAGTTTGCAGCTCAGCTGATGGACCATCTGGAAGA AAAAGAACTCGAAAGACAGTCGCCATGCCTCCTCCATTAGCGAAGAAGCTGAGGAGAAAAGTAAATCCATGGTCCCGTGCGGAGGTGGAAGCCCTGGAAG ATGGCGTGAGAGATTATGGAACTGGCCTCTGGAAGGCCATTTTGAAGTCGAGACAACAAGTGCTTGGTGCGAGGAATGAGGTTGATCTAAAGGACAAGTG GAGGAACTTGCATAAGCATCAGTAG
AA sequence Show only first row Show all	>Lus10017319 pacid=23140211 polypeptide=Lus10017319 locus=Lus10017319.g ID=Lus10017319.BGIv1.0 annot-version=v1.0 MTRKNTAGSTHDSLTAEAVSKSGLMTRKNTAGSTHDSLTAEAVSKSGLMTRKNTAGSTHDSLTAEAVSKSGLMTRKNTAGSTHDSLTAEAVSKSGLMTRK NTAGSTHDSLTAEAVSKSGLMTRKNTAGSTHDSLTAEAVSKSGLMTRKNTAGSTHDSLTAEAVSKSGLMTRKNTAGSTHDSLTAEAVSKSGLMTRKNTAG STHDSLTAEAVSKSGLMTRKNTAGSTHDSSTAEAPQNISHPASVLGIPAEVGRPTPSSSQKDCHESQQADKNKAVGESSRHPNVPMVDAVCSSADGPSGR KRTRKTVAMPPPLAKKLRRKVNPWSRAEVEALEDGVRDYGTGLWKAILKSRQQVLGARNEVDLKDKWRNLHKHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58340	MYB		myb-like HTH transcriptional r...		Lus10017319 [exp]	0	1
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10028956 [exp]	7.1	0.8790
AT3G10400		U11/U12-31K	U11/U12-31K, RNA recognition m...		Lus10037960 [exp]	11.0	0.8319
AT5G27260			unknown protein		Lus10037335 [exp]	15.7	0.8012
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10019638 [exp]	32.9	0.8051
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Lus10008988 [exp]	46.7	0.8345
AT5G48160		OBE2	OBERON2, Protein of unknown fu...		Lus10012327 [exp]	47.2	0.8285
AT5G58340	MYB		myb-like HTH transcriptional r...		Lus10020771 [exp]	47.8	0.8295
AT4G08240			unknown protein		Lus10009881 [exp]	47.9	0.8425
AT1G44790			ChaC-like family protein (.1)		Lus10028029 [exp]	52.8	0.8179
AT1G32730			unknown protein		Lus10040132 [exp]	61.8	0.8148

Compare expression of checked genes

Lus10017319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.