Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58340 59 / 6e-09 MYB myb-like HTH transcriptional regulator family protein (.1.2) AT1G15720 57 / 2e-08 MYB TRFL5 TRF-like 5 (.1) AT1G17460 54 / 4e-07 MYB TRFL3 TRF-like 3 (.1.2) AT1G72650 54 / 5e-07 MYB TRFL6 TRF-like 6 (.1.2) AT1G17520 52 / 9e-07 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1) AT1G72740 48 / 1e-05 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT1G49950 48 / 1e-05 MYB ATTRB1, TRB1 telomere repeat binding factor 1 (.1.2.3) AT3G49850 47 / 3e-05 MYB TBP2, TRB3, ATTRB3 TELOMERE-BINDING PROTEIN 2, telomere repeat binding factor 3 (.1) AT5G67580 46 / 5e-05 MYB ATTBP3, TRB2, ATTRB2 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT3G12560 45 / 0.0002 ATTBP2, TRFL9 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017319 [exp] 742 / 0 AT5G58340 66 / 2e-11 myb-like HTH transcriptional regulator family protein (.1.2) Lus10001494 [exp] 608 / 0 ND 40 / 0.004 Lus10002926 [exp] 563 / 3e-178 AT2G25320 2345 / 0.0 TRAF-like family protein (.1) Lus10003404 [exp] 318 / 7e-104 ND / Lus10042209 [exp] 108 / 1e-24 AT1G15720 70 / 1e-12 TRF-like 5 (.1) Lus10009912 [exp] 102 / 2e-22 AT1G15720 64 / 1e-10 TRF-like 5 (.1) Lus10024200 [exp] 102 / 3e-22 AT1G15720 65 / 5e-11 TRF-like 5 (.1) Lus10027773 [exp] 92 / 5e-19 ND 56 / 7e-08 Lus10020771 [exp] 66 / 1e-10 AT5G58340 70 / 1e-12 myb-like HTH transcriptional regulator family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154500 [exp] 69 / 1e-11 AT5G58340 88 / 4e-18 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G054401 [exp] 55 / 2e-07 AT1G68030 104 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.003G063700 [exp] 54 / 5e-07 AT1G72650 333 / 7e-106 TRF-like 6 (.1.2) Potri.016G053300 [exp] 53 / 6e-07 AT1G68030 115 / 7e-28 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G170200 [exp] 50 / 7e-06 AT1G72650 399 / 5e-131 TRF-like 6 (.1.2) Potri.006G126300 [exp] 49 / 2e-05 AT2G37025 120 / 2e-29 TRF-like 8 (.1.2) Potri.006G147400 [exp] 48 / 2e-05 AT1G17520 209 / 2e-66 Homeodomain-like/winged-helix DNA-binding family protein (.1) Potri.010G202400 [exp] 48 / 2e-05 AT3G12560 461 / 1e-154 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) Potri.008G057300 [exp] 47 / 4e-05 AT5G13820 427 / 8e-141 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Potri.018G066300 [exp] 47 / 4e-05 AT1G72740 186 / 6e-58 Homeodomain-like/winged-helix DNA-binding family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10017320 pacid=23140132 polypeptide=Lus10017320 locus=Lus10017320.g ID=Lus10017320.BGIv1.0 annot-version=v1.0 ATGGCCAGACCAATAGATCCGGCCAAATATATATGTGAATGGGTTATGAATTTCGTTCGCCGCGAACCAAATCCAGCTTCCATCCTTAAAGCAGTCGTCG TCACTCTCAACTCCTCGTTATCCGAGTTCGCTGACCGTCGCGCGAACAAGGTTCGGATTCTCAAGTTAATACAATCACTAATCGCCGGTGGGTCGGTCTC CGAGCCTATACTCGAGTTACTTGAAGCGATAGAGCAGATAGACCGGGAGAACGGCGAAGAAACCCCGACGTCTGAAAAGATGAAAGCCGCAGCCGCCTAC TGCGCGGTGGCGGTGCAGTGTACGGTGGGGGATGGAGACGTCAAATTCGAGCTCAGTGATCGGATATGGAGAGTTAGGGTTCTTAAGTTGGAGATGTCTG GAAGGAGCCATTTGGTTACGGATGTGCTGACGGGTTTTAGGGATGCAGCCGAGGGTGCTCTCTGGGTTGCTCGTGATTTGGTCAGGTTTAAGGAAGTGGC GACCAAGATTGTTGCCGCGAATTATGTTCGATCTTACTTAGATGAGGCCATGGCGGCGGTGGCTTGTTCTTCAAGTGAGCAAGACACTCTTCCTGGGTCT CTGGCGGCTGGAATCCCAAGTACATCTCTGGTATCTAGCCCCCCTGAAGTTCAGCAAGCATGTCTAGATACACTCAGATCATGTGTCGCCAAGTTACAAG CTGTGAATGATCCTCTTCCCAATGCTCGGCAGGTCTTTGAGTCATTGAGTGCTGAAGCACCATCCGACGTGGAGAGACCAGTTGGAAACCGGGACGAGAG AAATGTGGATGTTCTTCACTCATCTTCTAATGCTAGTGTGCCCGAACCCTCCGCTCAGCAGGGTCGTCAATGCTTTCAGACTGGCCAGAGCAGTAAAACA GCAGCTGGTTCGCCGGTGAGGCATCAAAATCTTCTGAAACCAGGCTTGATAACAAGGGGACTTGTTGCTCACCCATCTGTTGATGCTAGTATCCTTGACA TCCCAGCTGAAAAGGATAAGAGGAAAGAAGTAATCGTAATCAGCAATGGACTCGAATCCTCCGGTCAGCTGCATGATGAATGCTTTCAGATTGACCAGAG CAACAAGGCAGCAGCTAGTTCGTCGACTGCTAGCAGCACAAATGATTTATCGCCTGCTGAAGTTGTTTCGAAATCCGGTTGGATGACAAGGAAAAACACT GCTGGCAGCACACATGATTCATTGACTGCTGAAGCTGTTTCGAAATCCGGTTTGATGACAAGGAAAAACACTGCTGGTAGCACACATGATTCATTGACTG CTGAAGCTGTTTCGAAATCCGGTTTGATGACAAGGAAAAACACTGCTGGCAGCACACATGATTCATTGACTGCTGAAGCTGTTTCGAAATCCGGTTTGAT GACAAGGAAAAACACTGCTGGTAGCACACATGATTCATTGACTGCTGAAGCTGTTTCGAAATCCGGTTTGATGACAAGGAAAAACACTGCTGGTAGCACA CATGATTCATTGACTGCTGAAGCTGTTTCGAAATCCGGTTTGATGACAAGGAAAAACACTGCTGGTAGCACACATGATTCATTGACTGCTGAAGCTGTTT CGAAATCCGGTTTGATGACAAGGAAAAACACTGCTGGTAGCACACATGATTCATTGACTGCTGAAGCTGTTTCGAAATCCGGTTTGATGACAAGGAAAAA CACTGCTGGTAGCACACATGATTCATTGACTGCTGAAGCTGTTTCGAAATCCGGTTTGATGACAAGGAAAAACACTGCTGGTAGCACACATGATTCATTG ACTGCTGAAGCTGTTTCGAAATCCGGTTTGATGACAAGGAAAAACACTGCTGGTAGCACACATGATTCATTGACTGCTGAAGCTGTTTCGAAATCCGGTT TGATGACAAGGAAAAACACTGCTGGTAGCACACATGATTCATCGACTGCTGAAGCTCCACAAAACATTTCTCACCCAGCTAGTGTGCTTGGCATCCCAGC TGAAGTAGGTAGACCTACACCTTCCTCCTCTCAGAAGGATTGCCATGAGAGCCAGCAGGCCGATAAAAACAAGGCAGTTGGTGAGTCATCCAGGCATCCA AATGTTCCAATGGTTGATGCAGTTTGCAGCTCAGCTGATGGACCATCTGGAAGAAAAAGAACTCGAACGACAGTCGCCATGCCTCCTCCATTAGCGAAGA AGCTGAGGAGAAAAGTAAATCCATGGTCCCGTGCGGAGGTGGAAGCCCTGGAAGATGGCGTGAGAGATTATGGAACTGGCTTCTGGAAGGCCATTTTGAA GTCGAGACAACAAGTGTTTGGTGCGAGGAATGAGGTTGATCTAAAGGACAAGTGGAGGAACTTGCATAAGCATCAGTAG
AA sequence Show only first row Show all	>Lus10017320 pacid=23140132 polypeptide=Lus10017320 locus=Lus10017320.g ID=Lus10017320.BGIv1.0 annot-version=v1.0 MARPIDPAKYICEWVMNFVRREPNPASILKAVVVTLNSSLSEFADRRANKVRILKLIQSLIAGGSVSEPILELLEAIEQIDRENGEETPTSEKMKAAAAY CAVAVQCTVGDGDVKFELSDRIWRVRVLKLEMSGRSHLVTDVLTGFRDAAEGALWVARDLVRFKEVATKIVAANYVRSYLDEAMAAVACSSSEQDTLPGS LAAGIPSTSLVSSPPEVQQACLDTLRSCVAKLQAVNDPLPNARQVFESLSAEAPSDVERPVGNRDERNVDVLHSSSNASVPEPSAQQGRQCFQTGQSSKT AAGSPVRHQNLLKPGLITRGLVAHPSVDASILDIPAEKDKRKEVIVISNGLESSGQLHDECFQIDQSNKAAASSSTASSTNDLSPAEVVSKSGWMTRKNT AGSTHDSLTAEAVSKSGLMTRKNTAGSTHDSLTAEAVSKSGLMTRKNTAGSTHDSLTAEAVSKSGLMTRKNTAGSTHDSLTAEAVSKSGLMTRKNTAGST HDSLTAEAVSKSGLMTRKNTAGSTHDSLTAEAVSKSGLMTRKNTAGSTHDSLTAEAVSKSGLMTRKNTAGSTHDSLTAEAVSKSGLMTRKNTAGSTHDSL TAEAVSKSGLMTRKNTAGSTHDSLTAEAVSKSGLMTRKNTAGSTHDSSTAEAPQNISHPASVLGIPAEVGRPTPSSSQKDCHESQQADKNKAVGESSRHP NVPMVDAVCSSADGPSGRKRTRTTVAMPPPLAKKLRRKVNPWSRAEVEALEDGVRDYGTGFWKAILKSRQQVFGARNEVDLKDKWRNLHKHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58340	MYB		myb-like HTH transcriptional r...		Lus10017320 [exp]	0	1
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10023516 [exp]	1.0	0.8882
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10040400 [exp]	2.0	0.8845
AT3G13670			Protein kinase family protein ...		Lus10039203 [exp]	3.2	0.8487
AT5G54930			AT hook motif-containing prote...		Lus10016478 [exp]	4.2	0.8426
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10033185 [exp]	5.3	0.8530
AT2G15695			Protein of unknown function DU...		Lus10019874 [exp]	5.7	0.8698
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Lus10013348 [exp]	6.3	0.7967
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Lus10019754 [exp]	6.6	0.8284
AT4G22360			SWIB complex BAF60b domain-con...		Lus10014892 [exp]	6.7	0.8328
AT3G26990			ENTH/VHS family protein (.1)		Lus10020327 [exp]	8.0	0.8344

Compare expression of checked genes

Lus10017320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.