Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19740 1088 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50140 1051 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G02890 439 / 2e-135 AAA-type ATPase family protein (.1.2) AT4G02480 417 / 3e-127 AAA-type ATPase family protein (.1) AT4G24860 357 / 2e-106 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G64110 343 / 2e-103 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT5G52882 335 / 2e-100 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G62130 333 / 3e-98 AAA-type ATPase family protein (.1) AT4G28000 320 / 4e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G53540 237 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010204 [exp] 1747 / 0 AT3G19740 1242 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013429 [exp] 878 / 0 AT1G50140 1151 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10040976 [exp] 520 / 3e-172 AT3G19740 472 / 2e-154 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010282 [exp] 393 / 2e-118 AT4G02480 1408 / 0.0 AAA-type ATPase family protein (.1) Lus10036347 [exp] 391 / 9e-118 AT4G02480 1395 / 0.0 AAA-type ATPase family protein (.1) Lus10017535 [exp] 349 / 1e-105 AT1G64110 1157 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10028752 [exp] 347 / 9e-105 AT1G64110 1165 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10024692 [exp] 337 / 3e-101 AT1G64110 1176 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10027551 [exp] 325 / 7e-97 AT5G52882 1136 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G093300 [exp] 1133 / 0 AT3G19740 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G069800 [exp] 1110 / 0 AT1G50140 1215 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G096300 [exp] 466 / 2e-145 AT4G02480 1153 / 0.0 AAA-type ATPase family protein (.1) Potri.015G094100 [exp] 454 / 5e-141 AT4G02480 1128 / 0.0 AAA-type ATPase family protein (.1) Potri.014G131000 [exp] 434 / 1e-133 AT1G02890 1432 / 0.0 AAA-type ATPase family protein (.1.2) Potri.002G205900 [exp] 427 / 6e-131 AT1G02890 1445 / 0.0 AAA-type ATPase family protein (.1.2) Potri.003G133700 [exp] 347 / 8e-105 AT1G64110 1145 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.015G026900 [exp] 345 / 2e-104 AT5G52882 1146 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G035400 [exp] 342 / 3e-103 AT5G52882 1137 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G097600 [exp] 338 / 1e-101 AT1G64110 1159 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10017405 pacid=23140204 polypeptide=Lus10017405 locus=Lus10017405.g ID=Lus10017405.BGIv1.0 annot-version=v1.0 ATGTACGCAAGGATGATCAAGAATTGTAGTAATCTCAAATGGGGTTCGGTGTTTATGCCATCCATCCAGCTGATTAGGCCTAACACATTGCATCAGACCC GTGTTCGATCTCGCTTCCATAGAGCTAATTTGGTTCGAGTCTCGAATTCCCGTGGCAGCTCGATAAAGACGTGTCGGTTTAATTCATTCAGCACTAGTAC CTCAGGATGTAGGTATGTTAGTAGTCCAACCAGAAGGTTTCAGTTTCGTGCCTATAGTTCGGAAGGCGATGGACGTAGTAGTAGTAGTAGTAGCAGCAGC AGCAGTAGTAACACAAGTGAGGATAAATGTGATCCTCTAAATGGAATCTCGAAAGTTGGTGATGGGAAGGTAGGGAATGGGAAAGTAGGAGGAGGTGAGT CGAGATGCTGTAATACGCACGCGTGTCTAGCGGAACAAGATCAAAGGGAATGGCTTGATAATGAGAAGCTGGCTATAGAAGCTAAGAAGAAAGAGTCGCC CTTTCTAACTAGACGGGAGCGGTTTAGAAATGACTTCTTGCGGAGAGTCGTTCCCTGGGAGAAAATCCAGGTTTCGTGGGAATCTTTCCCATACCACATC AAGGAAAATACGAAAAACATTTTGCTGGAATGTGTGGCATCCCACTTAAAGAGTAAGAATTTTGCTACTTCGTATGGCTCTCGCTTGACGTCTTCAAGTG GGAGAATACTGCTTCAGAGCTCTCCAGGCACAGAACTTTACCGGGAAAGAGTAGTGAGAGCACTTGCGAGGAAGTTACAAGTTCCTCTGCTGGTTCTCGA TAGTAGCGCTCTTGCTCCTTATCAGTATCTTGATGACTACACATCCGAGGCCGAGTCAGATACAGAATCGGTGGATGAGGGTACATCAGAGTCCGAGGTT GATGAAGAGAATGAAGCAGCGAATGCTGAAGACGGTAGTAGTGAGGATGAAGTTGTTGATTTGTCGGCAATCGATGAGGCTGCCATCCGGAAGCTCATTC CCTTCGATATCGAAGAGTTTGAAAAGCAAGTCTCTGGAGAATCAGAAGCATCAAAGTCTGACACTGCTGACCCTTCTGATAACTCCAAAAGGCCTCTCAA GAAAGGCGATCGGGTGAAGTACATTGGCAGTTCAAATTCTGTTGAAGCTGATAACAGGCCCTTATCCAATGGTCAACGTGGCGAGGTATACGAGATCAAT GGAAATCAAGCTGCTGTTGTTTGGGAAATGGCTAATGATAGCCAAGCAAAAGAAGGAGACATGCATAAGGAACATGAAGAGTCATCTGGAAAATCCCCCG TATTTTGGATAAATGTTAAGGAGATTGAGCACAATCCTGATGCCGAGGCCGAAGACTGTTGTATCGCAATGGATGCGTTATATGAGATCTTGCAAACCAA GCAGCCGCTCGTAGTATATTTCCCAGACTTTTTCGTTTGGTTGTCTAGGGCAGTGCCCAAGTCGAACCGTAAGGAGTTTGTCCACAAGCTGCTGGAAATG CTTGACCAGCTTTGTGGTTCTGTTGTCTTGATTTGTGGTCATAATAACAAAGTCCAATCCGGGTCAAAGGAGAAGGAGACATTCACAATGATCCTTCCGA ATTTTGCTCGAGTGGATAAGCTGCCTCTTCCTTTAAAGAATCTTACTGAAGGTCTTAGAGGGACGAAAACATCTACTTCCATCGAATTCCATAAGCTCTT TCCGAATGTCTTGCGCCTTGACCCTCCCAAGGAAGAAGATCTCCTTATAACATTCAATAAACAGATTGAAGAGGATAAGAAAATAGTGATATCTAGGAGC AATTTATATGAACTGCATAAGGTTCTCGATGAAAACAAGATGTTTTGTGCAGACTTACTGGATGTAGATACTGATGGTTTAGTTCTGACTAAGCAGAAAG CGGAAAAAATCGTCGGCTGGGCTAAGAACCATCATTTGTCCTCCTGTGTACACCCATCAATAGAAAAGGAGAGATTGGTTTTGCCTCGTGAAAGCCTTGA GGTTGCTATCTTAAGGGGGAAAGATTACGAGATCTCAATGAGGAAACCGTCTCAAGATTTGAAGAACATGGCGAAGGATGAATTCGAGAGCAATTTCGTG TCGGCTGTGGTCCCTCCAGGAGAGATTGGTGTCAGATTCGACGATGTAGGAGCTCTGGAGGATGTGAAGAAGGCCTTGAACGAAGTCGTCATTCTTCCAA TGAGAAGACCGGAACTTTTCACTCATGGAAATTTGTTGAAGCCATGCAAAGGAATATTGCTATTCGGTCCTCCTGGAACTGGGAAGACTCTCCTTGCAAA AGCACTTGCCACTGAAGCAGGTGCAAACTTTATCAGCATAACAGGTTCAAATCTTACATCTAAGCTAATGTCTGCTGCTGCTAACTCTGTTATGCAGTGG TTTGGAGATGCTGAGAAGTTGACAAAGGCCCTTTTCTCCTTTGCCACCAAGCTTTCTCCTGTTATCATATTTATCGACGAGGTAGATAGTCTACTAGGGG CTCGAGGGGGTTCTCACGAGCACGAGGCTACGAGAAGAATGAGAAACGAGTTCATGGCAGCATGGGACGGATTAAGATCGAAAGACACTCAAAGGATCGT CATCCTTGGTGCCACGAATCGGCCGTTTGATCTTGATGATGCTGTGATTCGTCGTTTGCCTAGGAGAATATACGTGGACTTGCCTGATGCTGCGAATCGT TTGAAGATTCTGAAAATTATTCTCGGAAATGAGAACTTACATTCGGAATTCCAGTTTGAAGAACTTGCTAATGTAACCGATGGATATTCTGGCAGCGACT TGAAGAACCTTTGTATTGCTGCAGCATATAGGCCAGTGCAAGAAGTCATAGAAAAAGAAAACAAGGAAAAGAAGGATGATTATGTTGAAGGTTCGTCGTT AAGACCCCTCACCTTGGATGACTTCATCGAGGCAAAGGCTAAGGTTGGTCCATCGGTTTCGCACGATGCAGCGAGCATGAACGAGTTGCGGAAATGGAAC GAACAATACGGAGAAGGAGGCAGCCGGCAGAAGTCACGCTTTGGTTTTTGA
AA sequence Show only first row Show all	>Lus10017405 pacid=23140204 polypeptide=Lus10017405 locus=Lus10017405.g ID=Lus10017405.BGIv1.0 annot-version=v1.0 MYARMIKNCSNLKWGSVFMPSIQLIRPNTLHQTRVRSRFHRANLVRVSNSRGSSIKTCRFNSFSTSTSGCRYVSSPTRRFQFRAYSSEGDGRSSSSSSSS SSSNTSEDKCDPLNGISKVGDGKVGNGKVGGGESRCCNTHACLAEQDQREWLDNEKLAIEAKKKESPFLTRRERFRNDFLRRVVPWEKIQVSWESFPYHI KENTKNILLECVASHLKSKNFATSYGSRLTSSSGRILLQSSPGTELYRERVVRALARKLQVPLLVLDSSALAPYQYLDDYTSEAESDTESVDEGTSESEV DEENEAANAEDGSSEDEVVDLSAIDEAAIRKLIPFDIEEFEKQVSGESEASKSDTADPSDNSKRPLKKGDRVKYIGSSNSVEADNRPLSNGQRGEVYEIN GNQAAVVWEMANDSQAKEGDMHKEHEESSGKSPVFWINVKEIEHNPDAEAEDCCIAMDALYEILQTKQPLVVYFPDFFVWLSRAVPKSNRKEFVHKLLEM LDQLCGSVVLICGHNNKVQSGSKEKETFTMILPNFARVDKLPLPLKNLTEGLRGTKTSTSIEFHKLFPNVLRLDPPKEEDLLITFNKQIEEDKKIVISRS NLYELHKVLDENKMFCADLLDVDTDGLVLTKQKAEKIVGWAKNHHLSSCVHPSIEKERLVLPRESLEVAILRGKDYEISMRKPSQDLKNMAKDEFESNFV SAVVPPGEIGVRFDDVGALEDVKKALNEVVILPMRRPELFTHGNLLKPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSNLTSKLMSAAANSVMQW FGDAEKLTKALFSFATKLSPVIIFIDEVDSLLGARGGSHEHEATRRMRNEFMAAWDGLRSKDTQRIVILGATNRPFDLDDAVIRRLPRRIYVDLPDAANR LKILKIILGNENLHSEFQFEELANVTDGYSGSDLKNLCIAAAYRPVQEVIEKENKEKKDDYVEGSSLRPLTLDDFIEAKAKVGPSVSHDAASMNELRKWN EQYGEGGSRQKSRFGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19740			P-loop containing nucleoside t...		Lus10017405 [exp]	0	1
AT3G19740			P-loop containing nucleoside t...		Lus10010204 [exp]	1.4	0.9300
AT3G56140			Protein of unknown function (D...		Lus10009845 [exp]	2.4	0.8791
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Lus10012114 [exp]	3.7	0.9162
AT1G19920		ASA1, APS2	ATP SULFURYLASE ARABIDOPSIS 1,...		Lus10033158 [exp]	6.0	0.8792
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10029669 [exp]	6.5	0.8796
AT3G16950		PTLPD1, LPD1	lipoamide dehydrogenase 1 (.1....		Lus10037741 [exp]	8.2	0.8554
AT3G43610			Spc97 / Spc98 family of spindl...		Lus10008428 [exp]	16.7	0.8792
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Lus10010356 [exp]	17.7	0.8783
AT3G16950		PTLPD1, LPD1	lipoamide dehydrogenase 1 (.1....		Lus10016877 [exp]	20.0	0.8512
AT5G11560			catalytics (.1)		Lus10022144 [exp]	21.4	0.8774

Compare expression of checked genes

Lus10017405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.