Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69550 307 / 4e-87 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G40910 295 / 4e-84 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12010 295 / 1e-83 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 294 / 7e-83 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G44510 283 / 1e-79 TAO1 target of AVRB operation1 (.1) AT5G18360 276 / 9e-79 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G65850 274 / 6e-77 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT2G14080 273 / 6e-76 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 268 / 3e-75 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16890 268 / 3e-74 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010221 [exp] 1147 / 0 AT5G17680 369 / 4e-109 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10017419 [exp] 905 / 0 AT4G12010 272 / 9e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015648 [exp] 741 / 0 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10017420 [exp] 728 / 0 AT1G69550 164 / 1e-42 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10009107 [exp] 694 / 0 AT4G12010 347 / 4e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015650 [exp] 688 / 0 AT4G12010 346 / 3e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10007030 [exp] 668 / 0 AT4G12010 316 / 3e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10023051 [exp] 665 / 0 AT4G12010 415 / 2e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10008221 [exp] 629 / 0 AT4G12010 400 / 8e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G113701 [exp] 393 / 4e-118 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 389 / 1e-115 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 386 / 1e-115 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 367 / 1e-109 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 365 / 1e-108 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G070393 [exp] 368 / 1e-107 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069600 [exp] 361 / 1e-105 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070300 [exp] 347 / 2e-104 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097800 [exp] 352 / 6e-104 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 348 / 2e-102 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10017418 pacid=23140261 polypeptide=Lus10017418 locus=Lus10017418.g ID=Lus10017418.BGIv1.0 annot-version=v1.0 ATGGCTACAGCTTCTTGTTCTTGTTCTTCTTCTTCTGCATCTCATAGCTCTCGATGTGATGTTTTCCTGTGTTTTCGAGGCGACGACACGCGTCATGGTT TCACCAGCCACCTCATGTCTGCTCTGTGTGATAGGCAAATCCAAACCTTCATAGACGACAAGCTCGAGAAAACAGAGAGCATCGGTGAGCTTCAATCCAT CCTCCAAAGAACTGCTCTTTCCGTGGTGGTTTTTTCTGTGAAATTTGCGGATTCGGTCTGGTGCCTCGATGAGGTAGCAACCATAGCTCGAAAGATGAAA GAATCTGGGCATCGGGTTCTACCGGTTTTCTACAAAGTGGATCCATCAGACGTGACAGACGACGCTCGAAGCTATGCGGCTACCATCGATCGTGAACATA AGTCCAGAAGTAGTTATGTAGAGGATAAGAAGAGATGGATGGATGCTTTGAATGTTGTGGCTGATTCTGCTGGCCATACCTCACAGACCTTCAAAAATGA ATCTGAATTGATTAAGGTAATTGTGGAAGATGTTTTGAAGAAACTAATTGGCTTGTCACCGGTTATCAAGAATGATAACTTGGTTGCTATGAGTTCACGT ATTTTCGAGGTTGAGCGACTACTGGCTATGGACAAGGTAAAAGAGACTCGTGTCGTTGGGTTATGGGGAATGGGGGGAGTTGGGAAAACAACTCTAGCAA GAGCGTGTTATGAAAGGATAACTTGGTCCGACAAAGGGATCAAGTGTCTTTTCATTTCAAACGTCAATGAAAAATATGGAAAACATCTTGACGTTGAAGA AGTTGTTTGCAAATACTATTCAAAATTGTTGAATGAGGATAACATTGATCGTGAAGATTTGAATATTACTTATCGACGGGGACGTCTGTCGCGTTTGAGG GTATTCATTGTCCTTGACAATGTTGAGACTTCGCAGCAATTGGAGCAATTGATTCTAGGAGGTATCTCTGATCTCAGCACAGTCTTTGCAACGGGAAGTA GAATCCTCGTGACGACAAAAAATAGAGAAGTGCTAAGAAATGCTACGAAGGAGATTTATAAAGTTGAGTGTTTGAATGCCAAGGAATCCACCCAATTGTT TAGTCTGCATGCGTTCAAACACGACTTCCCTCAAAATTGGACAGATAAGTGTCGTCTTGCAACATCATATTGTAAGGGACATCCCTTGGCACTTAAGATC TTGGGGGGTGCATTGTGCAGTCGAGATATGCATTATTGGGAAAGTTTCTTGAGTGGGTTGAAGCAAACTGGAGACACAAATATCCACAACGTTTTTAGGA GGAGTTACGATATGCTTGGGGAGATAGAGCAGATAATATTTCTGGATGTTGCATGTCTATTTGATAGCATACCAAAATCTCAATTGATTGAGTATATGTC CACCATGCACCCCGCTTCTCTTGTAAAGGTGGAAATTCTAATCGATAGATCCCTCTTAGCTTGTGTTTCTAACGAGAAGATTGAGGTGCATGATCTACTT AAGGAGATGGCTTGGAATATTGTCAACGGAGAACCAAAGCTTGGCAAACGCAGCAGATTGGCCGATCCTGATGATATTCGTAAATTGCTTAGGGCTCGAG ATGTTCACAATTTTTTTATAACTTCAGAAGTGAAAAATTGGAATACATCATTTCTCGGCTTCTTCAAAGCCATAGGAATGCACCTTACCCATCTCATTAT ACAATTTAGTCCAATTCAGAGATGTTGGAAAGGACATGACCAACCCCAACTTGTGAACTTGTTGGTACTTAATCTCTCCTACTGTAGGAATCTAATTGCT ATTCCAAATATATCAAGTTCTTCAAAACTCGAAGAACTCTTTCTTGGTCAATGTGAAAGCCTAGTTGAGGTACCTTCGCATGTTCAATACTTGACAAAGT TGATAACATTAGACCTTAATGGTTGCCGAAACCTCAAGCGTCTTCCGCCTAGACTTGACTCAAAGTTGCTTAAGCATGTTAGGATGGCGAGTTGTCTCAA TGTCAGGCACTGCCCAGAGATTATTTCAAAAGAGTTGGAGGCATTGGTTTTATCTAAGACATCCCTTATAGAACTACCAAGTGCAATTTACAATGTCAAG CAAAATGGAGTCTTATATCTTCATGGTGAAAACATTACCGAATTTCCTGCAATTACAACAAGCTTGAGGAGATTTTCATTGACCAGTACTTCAATAAGAG ATATTGGTTTTTATGACCGTCACACTTCTTCTGAATCGATTATGCCGAAATTCAACACACTGCTTCTTTCTGGAAATTTGCAACTGAAGAGCCTGCCGAG TAGCATATGGAACATGGTCTCTTATGAATTCGAGATTCAACAGTGCCCTTTGATTGAAATTTTGCCGGAGATTTTGGAGCCTGTTACAGGCTTAACTAGT ATTGATATAAGTGAATGTGGAAACTTCAAAAGCCTGCCATCTAGCATCAACAATATAAGATCTCTCGAACGACTTGATTTATCACAGACAGGTATTCAAT CTCTGCCGGAACTCCCACAAAATCTGAAGTCATTGAAAGTAAATGGTTGCAAGTTTTTACAAGCTCTACCAAGCAACACAAGTGAGCTGTTGCATCTGAA GCAACTCCATTTTAACGAATGCCCACAACTGGCAAATTTCCTTGTTCATCCCATCTTGTATCAGTCACAGGAGTGTCAACTTTTATGTTCAAGAAGTGAG CTTCCTGAATGGTTAACCTACAAAAGCATGAACTTGAAGGAAGAGGACGAGGATTCTTGCAATGTGAAGGTAGAGTTGCCTCCTCCTCATAGCACTGGCC AGCCAATGATTGTTAAGGGAATTGCGTTTGGGGTTGTGTTCTCTTCCCGCTTTTGGTTGGATATGAGATGCGATTGCAAAGTCGGCAACGCCATCGTTGC ATCTTGGAATTGCAGTAACTGGTATTTTTACAGTGAACGTGATGAGTCATCGAGAGAAAAATTATGGTTGCAATACGACAAGATGGCTGTGGGAAGTAAA GAAGACGTAGTGTGGTATGTCAAATATGCTGGAGCCACTGCTACGTTCAATTTTCACATTCGTGACCGGTTTGGAACAGCCAAAATAAAAGGATGTGGGG TTTGTCTGCTCTACTAA
AA sequence Show only first row Show all	>Lus10017418 pacid=23140261 polypeptide=Lus10017418 locus=Lus10017418.g ID=Lus10017418.BGIv1.0 annot-version=v1.0 MATASCSCSSSSASHSSRCDVFLCFRGDDTRHGFTSHLMSALCDRQIQTFIDDKLEKTESIGELQSILQRTALSVVVFSVKFADSVWCLDEVATIARKMK ESGHRVLPVFYKVDPSDVTDDARSYAATIDREHKSRSSYVEDKKRWMDALNVVADSAGHTSQTFKNESELIKVIVEDVLKKLIGLSPVIKNDNLVAMSSR IFEVERLLAMDKVKETRVVGLWGMGGVGKTTLARACYERITWSDKGIKCLFISNVNEKYGKHLDVEEVVCKYYSKLLNEDNIDREDLNITYRRGRLSRLR VFIVLDNVETSQQLEQLILGGISDLSTVFATGSRILVTTKNREVLRNATKEIYKVECLNAKESTQLFSLHAFKHDFPQNWTDKCRLATSYCKGHPLALKI LGGALCSRDMHYWESFLSGLKQTGDTNIHNVFRRSYDMLGEIEQIIFLDVACLFDSIPKSQLIEYMSTMHPASLVKVEILIDRSLLACVSNEKIEVHDLL KEMAWNIVNGEPKLGKRSRLADPDDIRKLLRARDVHNFFITSEVKNWNTSFLGFFKAIGMHLTHLIIQFSPIQRCWKGHDQPQLVNLLVLNLSYCRNLIA IPNISSSSKLEELFLGQCESLVEVPSHVQYLTKLITLDLNGCRNLKRLPPRLDSKLLKHVRMASCLNVRHCPEIISKELEALVLSKTSLIELPSAIYNVK QNGVLYLHGENITEFPAITTSLRRFSLTSTSIRDIGFYDRHTSSESIMPKFNTLLLSGNLQLKSLPSSIWNMVSYEFEIQQCPLIEILPEILEPVTGLTS IDISECGNFKSLPSSINNIRSLERLDLSQTGIQSLPELPQNLKSLKVNGCKFLQALPSNTSELLHLKQLHFNECPQLANFLVHPILYQSQECQLLCSRSE LPEWLTYKSMNLKEEDEDSCNVKVELPPPHSTGQPMIVKGIAFGVVFSSRFWLDMRCDCKVGNAIVASWNCSNWYFYSERDESSREKLWLQYDKMAVGSK EDVVWYVKYAGATATFNFHIRDRFGTAKIKGCGVCLLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44510		TAO1	target of AVRB operation1 (.1)		Lus10017418 [exp]	0	1
AT3G49060			U-box domain-containing protei...		Lus10014772 [exp]	4.7	0.8012
AT4G12010			Disease resistance protein (TI...		Lus10016029 [exp]	6.3	0.7456
AT4G12010			Disease resistance protein (TI...		Lus10015648 [exp]	6.6	0.7641
AT1G71530			Protein kinase superfamily pro...		Lus10002469 [exp]	13.0	0.7580
AT4G17250			unknown protein		Lus10004355 [exp]	21.2	0.6954
AT5G55530			Calcium-dependent lipid-bindin...		Lus10043169 [exp]	21.3	0.7365
AT3G44480		COG1, RPP10, RP...	recognition of peronospora par...		Lus10007455 [exp]	22.4	0.7255
AT2G45910			U-box domain-containing protei...		Lus10016557 [exp]	26.2	0.7308
AT1G27170			transmembrane receptors;ATP bi...		Lus10007823 [exp]	26.6	0.7111
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10037394 [exp]	27.1	0.7200

Compare expression of checked genes

Lus10017418 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.