Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12010 268 / 2e-78 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 253 / 2e-73 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19510 244 / 2e-70 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G40910 242 / 1e-69 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G51630 236 / 3e-67 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT5G17680 236 / 3e-67 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT3G44480 234 / 2e-66 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G11250 231 / 2e-65 Disease resistance protein (TIR-NBS-LRR class) (.1) AT3G44630 227 / 5e-64 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT5G41750 226 / 7e-64 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017418 [exp] 907 / 0 AT5G44510 335 / 1e-96 target of AVRB operation1 (.1) Lus10010221 [exp] 805 / 0 AT5G17680 369 / 4e-109 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10015648 [exp] 689 / 0 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015650 [exp] 660 / 0 AT4G12010 346 / 3e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10007030 [exp] 612 / 0 AT4G12010 316 / 3e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10024149 [exp] 593 / 0 AT4G19510 213 / 8e-61 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) Lus10018021 [exp] 523 / 2e-173 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10012246 [exp] 468 / 2e-156 AT4G12010 396 / 9e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10009107 [exp] 474 / 8e-156 AT4G12010 347 / 4e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068200 [exp] 327 / 4e-100 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 318 / 2e-96 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 312 / 2e-93 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 310 / 3e-93 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G095932 [exp] 293 / 2e-92 AT4G11170 294 / 5e-88 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G068300 [exp] 304 / 9e-92 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 301 / 3e-90 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 294 / 6e-88 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G070300 [exp] 285 / 3e-86 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098500 [exp] 281 / 2e-84 AT5G17680 496 / 4e-157 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10017419 pacid=23140165 polypeptide=Lus10017419 locus=Lus10017419.g ID=Lus10017419.BGIv1.0 annot-version=v1.0 ATGGCTGCAATTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCTTCTTCTTCTGCATCTCATAGCTCTCTGTACGATGTTTTCCTGTGTTTTCGAG GCGACGACACGCGCAATGGTTTCACCAGCCACCTCATGTCTGCTCTGTGTGATAGGCAAATCCAAACCTTCATAGACGACAAGCTCGAGAGAACAGAGAG CATCGGTGAGCTTCTATCCATCCTCGAAAGAACTGCTCTTTCTGTGGTGGTTTTTTCTGAGAAATTTGCGGATTCGGTCTGGTGCCTCGATGAGGTAGCA ACCATAGCCCGAAAGATGAAAGAATCTGGGCATCGGGTTCTACCGGTTTTCTACAAAGTGGATCCATCAGACGTGACAGACGACACTGGAAGCTGTGCGG CTACCATGGATAGTGAACATAATAAGTCCAAGAGTAGTTATGTAGAGGATAAAAAGAGATGGATGGATGCTTTGAATGTTGTGGCTGATTCTGCTGGCCA TACCTCAGAAGCTATCAAAAATGAATCTGAATTGGTTAATGCAATTGTGGAAAATGTTTTGAAGAAACTAATTGACATGTCACCGGTTATCAAGAATGAT AACTTGGTTGCTATGAGTTTACGTATTTCCGAGGTTGAGCGACTACTGGCTATGGACAAAGTAAAAGAGACTCGCGTTGTTGGGTTATGGGGAATGGGCG GGGTTGGAAAAACAACTCTAGCAAGAGCGTGTTATGAAAGGATAACTTCGTCCGACAAAAGGATTAAGTGTCTTTTTATTTCAAATGTAAATGAAAAATA CGGAAAGCATCTTGACGTTGAAGAAGTTGTTTGCAAACTCTATTCAAAACTGTTGGATGAGGATAAAATTGATCGTGAAGATTTGAATATTACTTATCGA CGGGAACGTCTGTCGCGTTTGAGGGTATTCATTGTCCTTGACAATGTTGAAACTTCGCAGCAATTGGAACAATTTGTTTTGGGAGGTGTCTCCGATCTCA ACACAATCTTTGCAACGGGGAGTAGAATCCTCATGACGACAAGAAATAGAGATGTGCTTAAAAACTCGACGAGGGAGATTTACAAAGTTGAGTGTCTGAA TGACGAGGAATCCACCAAGTTGTTTAGTTTGCATGCGTTCATACCCGGCTTCCCTCAAGATAATTGGACAGATAAGTGTCGTCTTGCAACATCATATTGT AAGGGACATCCCTTGGCGCTTAAGATCATGGGGGGTGCATTGTTCAGTCGAGATATGCATTATTGGGAAAGTTTCTTGAGCGGGTTGAAGCAAACTGGAG AGACAGATATCCGTAACTTTTTTAGGAGGAGTTACGATATGCTTGGGGAAATAGAGCAAATAATATTTCTTGATGTTGCATGTCTATTTGATAGCATACC AAAATCTCAATTGATTGAGTATATGTCCACCATGCACCCCGCTTCTCTTGTTAAGGTGGAAATTTTAATCGATAGCTCCCTCTTAGCTTGTGTTTCTAAC GAGAAGATTGAGGTGCATGATCTACTTAAGGAGATGGCTTGGAATATTTTCAATGGAGAACCAAAGCTTAGCAAACGCAACAGATTCCTGATGATATTCG TAAATTGCTTAGGGCTCGAGATGTTCACAAGTTTTTTGTAA
AA sequence Show only first row Show all	>Lus10017419 pacid=23140165 polypeptide=Lus10017419 locus=Lus10017419.g ID=Lus10017419.BGIv1.0 annot-version=v1.0 MAAISSSSSSSSSSSASSSASHSSLYDVFLCFRGDDTRNGFTSHLMSALCDRQIQTFIDDKLERTESIGELLSILERTALSVVVFSEKFADSVWCLDEVA TIARKMKESGHRVLPVFYKVDPSDVTDDTGSCAATMDSEHNKSKSSYVEDKKRWMDALNVVADSAGHTSEAIKNESELVNAIVENVLKKLIDMSPVIKND NLVAMSLRISEVERLLAMDKVKETRVVGLWGMGGVGKTTLARACYERITSSDKRIKCLFISNVNEKYGKHLDVEEVVCKLYSKLLDEDKIDREDLNITYR RERLSRLRVFIVLDNVETSQQLEQFVLGGVSDLNTIFATGSRILMTTRNRDVLKNSTREIYKVECLNDEESTKLFSLHAFIPGFPQDNWTDKCRLATSYC KGHPLALKIMGGALFSRDMHYWESFLSGLKQTGETDIRNFFRRSYDMLGEIEQIIFLDVACLFDSIPKSQLIEYMSTMHPASLVKVEILIDSSLLACVSN EKIEVHDLLKEMAWNIFNGEPKLSKRNRFLMIFVNCLGLEMFTSFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12010			Disease resistance protein (TI...		Lus10017419 [exp]	0	1
AT1G69550			disease resistance protein (TI...		Lus10017420 [exp]	1.7	0.8927
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10025564 [exp]	7.0	0.7883
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Lus10012333 [exp]	14.4	0.7998
AT2G14260		PIP	proline iminopeptidase (.1.2)		Lus10035652 [exp]	33.0	0.7918
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10036773 [exp]	43.6	0.7690
					Lus10024788 [exp]	91.5	0.7447
AT4G39830			Cupredoxin superfamily protein...		Lus10036956 [exp]	92.8	0.7247
AT4G32250			Protein kinase superfamily pro...		Lus10002923 [exp]	100.3	0.7518
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10014149 [exp]	106.3	0.7448
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Lus10006379 [exp]	119.6	0.7287

Compare expression of checked genes

Lus10017419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.