Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40370 805 / 0 LAC5 laccase 5 (.1) AT5G05390 791 / 0 LAC12 laccase 12 (.1) AT2G30210 644 / 0 LAC3 laccase 3 (.1) AT5G07130 637 / 0 LAC13 laccase 13 (.1) AT5G01190 496 / 5e-172 LAC10 laccase 10 (.1) AT2G38080 495 / 6e-172 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT2G29130 491 / 5e-170 LAC2, ATLAC2 laccase 2 (.1) AT5G60020 488 / 9e-169 LAC17, ATLAC17 laccase 17 (.1) AT5G03260 486 / 2e-168 LAC11 laccase 11 (.1) AT5G09360 484 / 2e-167 LAC14 laccase 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007532 [exp] 975 / 0 AT2G40370 804 / 0.0 laccase 5 (.1) Lus10009841 [exp] 860 / 0 AT5G05390 811 / 0.0 laccase 12 (.1) Lus10040957 [exp] 845 / 0 AT5G05390 810 / 0.0 laccase 12 (.1) Lus10017427 [exp] 769 / 0 AT2G40370 894 / 0.0 laccase 5 (.1) Lus10007531 [exp] 765 / 0 AT2G40370 799 / 0.0 laccase 5 (.1) Lus10042249 [exp] 588 / 0 AT2G30210 696 / 0.0 laccase 3 (.1) Lus10027747 [exp] 545 / 0 AT3G09220 707 / 0.0 laccase 7 (.1) Lus10035546 [exp] 544 / 0 AT3G09220 710 / 0.0 laccase 7 (.1) Lus10002227 [exp] 510 / 2e-177 AT5G03260 926 / 0.0 laccase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G183500 [exp] 836 / 0 AT5G05390 915 / 0.0 laccase 12 (.1) Potri.008G073800 [exp] 823 / 0 AT5G05390 893 / 0.0 laccase 12 (.1) Potri.010G183600 [exp] 812 / 0 AT2G40370 937 / 0.0 laccase 5 (.1) Potri.008G073700 [exp] 810 / 0 AT2G40370 946 / 0.0 laccase 5 (.1) Potri.013G152700 [exp] 655 / 0 AT2G30210 916 / 0.0 laccase 3 (.1) Potri.019G124300 [exp] 643 / 0 AT2G30210 845 / 0.0 laccase 3 (.1) Potri.006G094100 [exp] 535 / 0 AT3G09220 691 / 0.0 laccase 7 (.1) Potri.006G097000 [exp] 526 / 0 AT2G38080 914 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.006G097100 [exp] 523 / 0 AT2G38080 896 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.006G096900 [exp] 520 / 0 AT2G38080 899 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10017426 pacid=23140205 polypeptide=Lus10017426 locus=Lus10017426.g ID=Lus10017426.BGIv1.0 annot-version=v1.0 ATGAGGACCGGATGGGCGGATGGGCCCGAGTTTGTGACACAATGCCCTATCCGTCCTGGAGGTAGCTACACGTACCGATTTACTGTTCGTGGTCAAGAAG GGACTCTCTGGTGGCACGCTCATAGCTCTTGGCTCAGAGCCACTGTGTATGGAGCTTTGCTCATCCAGCCTAGAAATGGGACGGAGTTCCCCTTTCCTAA ACCCGCTCGTCAATCCACTTTAATGCTCGGGGAATGGTGGAATGCAAATCCGGTTGATGTTCAAAGAGAATCCATCCGAACCGGTGGGGCTCCAAACATT TCAGATGCTTACACTATCAACGGCCAACCGGGAGATCTCTACAATTGTTCTAGCCAAGACACCACTGTCGTCCCGATCGCTGCCGGCGAGACCAACCTCC TCCGAGTCATCAACGCCGCAATGAACCAGCCGCTATTCTTCTCCATCGCCAACCACAAATTCACCGTATTCGGCGCTGACGCCTCCTACGTCAAACCCTT CACCACATCGGTCCTGATGCTCGGCCCGGGCCAAACCACCGACGTTCTCATCGTCGGCGACCAACCCCCCAACCGCTACTACATCGCCGCCCGCGCCTAC CAAAGCGCGCAAAACGCCCCCTTCGACAACACAACCACCACCGCAATCCTTCAGTACAAATCCGCCCCATGCTCCGGTGGATCAAAATCCTGCCCCGCCA ATTCCAAACCTATTATGCCGCAACTCCCTGCCTTCAACGACACGCAAACCGTCACCAAGTTCAGCACCAGCTTCAGAAGCCGAGAAAAGGCGCTGGTCCC CGCCGAAATCGACGAGAATATGCTGATAACGGTAGGATTGGGGCTGAACCCCTGCCCGCCGAATTTCAACGCCAGACAACGCTGTCAGGCGCCCAACGGA ACTAGATTCACTGCGAGCATGAACAACGTTTCGTTCGTGCTCCCGTCGAATTTTTCCCTGTTGCAGGCTCATAAACAAGGGATACAGGGAGTTTTCACCT CCGATTTTCCGGCAGTTCCGCCCAGGGTTTTCGACTATACCGGGAATGTGAGCAGGGCGTTGTGGCGGCCGCAGAACGGGACTAGATTGTACAGGTTGAA ATACGGAGACAGAGTTCAAATTGTGCTTCAGGATACTAGCATCGTGACGCCCGAGAATCATCCGATTCATCTCCATGGATATGATTTCTATATCGTTGCT GAAGGGTTCGGGAATTTTAATCCAAAAACTGATACTTCCAAATTCAACCTTGTTGATCCGCCTCTGAGGAACACGGCTGCTGTTCCGGTGAACGGATGGG CAGTTATCCGATTCGTCGCCGATAATCCAGGGGTGTGGCTGATGCATTGCCATTTGGATGTGCACATTGGGTGGGGATTGGCCACAGCATTCCTGGTGGA GGATGGAGTTGGGAAATTGGAAGCCATTGAGCCTCCTCCTGAAGATCTTCCCATTTGTTGA
AA sequence Show only first row Show all	>Lus10017426 pacid=23140205 polypeptide=Lus10017426 locus=Lus10017426.g ID=Lus10017426.BGIv1.0 annot-version=v1.0 MRTGWADGPEFVTQCPIRPGGSYTYRFTVRGQEGTLWWHAHSSWLRATVYGALLIQPRNGTEFPFPKPARQSTLMLGEWWNANPVDVQRESIRTGGAPNI SDAYTINGQPGDLYNCSSQDTTVVPIAAGETNLLRVINAAMNQPLFFSIANHKFTVFGADASYVKPFTTSVLMLGPGQTTDVLIVGDQPPNRYYIAARAY QSAQNAPFDNTTTTAILQYKSAPCSGGSKSCPANSKPIMPQLPAFNDTQTVTKFSTSFRSREKALVPAEIDENMLITVGLGLNPCPPNFNARQRCQAPNG TRFTASMNNVSFVLPSNFSLLQAHKQGIQGVFTSDFPAVPPRVFDYTGNVSRALWRPQNGTRLYRLKYGDRVQIVLQDTSIVTPENHPIHLHGYDFYIVA EGFGNFNPKTDTSKFNLVDPPLRNTAAVPVNGWAVIRFVADNPGVWLMHCHLDVHIGWGLATAFLVEDGVGKLEAIEPPPEDLPIC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40370		LAC5	laccase 5 (.1)		Lus10017426 [exp]	0	1
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10018208 [exp]	3.0	0.9610
AT4G39230			NmrA-like negative transcripti...		Lus10026348 [exp]	3.2	0.9609
AT4G39230			NmrA-like negative transcripti...		Lus10042313 [exp]	6.0	0.9422
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Lus10008913 [exp]	7.1	0.9525
AT5G54800		ATGPT1, GPT1	ARABIDOPSIS GLUCOSE 6-PHOSPHAT...		Lus10011155 [exp]	10.0	0.9395
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Lus10042314 [exp]	12.4	0.9268
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10040697 [exp]	13.3	0.9148
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10008677 [exp]	18.2	0.9281
AT2G43630			unknown protein		Lus10002105 [exp]	20.8	0.9209
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10004656 [exp]	20.9	0.9148

Compare expression of checked genes

Lus10017426 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.