Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40370 860 / 0 LAC5 laccase 5 (.1) AT5G05390 832 / 0 LAC12 laccase 12 (.1) AT2G30210 730 / 0 LAC3 laccase 3 (.1) AT5G07130 706 / 0 LAC13 laccase 13 (.1) AT2G29130 554 / 0 LAC2, ATLAC2 laccase 2 (.1) AT5G03260 544 / 0 LAC11 laccase 11 (.1) AT5G09360 539 / 0 LAC14 laccase 14 (.1) AT2G38080 539 / 0 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G01190 534 / 0 LAC10 laccase 10 (.1) AT5G60020 532 / 0 LAC17, ATLAC17 laccase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007531 [exp] 989 / 0 AT2G40370 799 / 0.0 laccase 5 (.1) Lus10007532 [exp] 773 / 0 AT2G40370 804 / 0.0 laccase 5 (.1) Lus10009841 [exp] 769 / 0 AT5G05390 811 / 0.0 laccase 12 (.1) Lus10017426 [exp] 769 / 0 AT2G40370 805 / 0.0 laccase 5 (.1) Lus10040957 [exp] 760 / 0 AT5G05390 810 / 0.0 laccase 12 (.1) Lus10042249 [exp] 618 / 0 AT2G30210 696 / 0.0 laccase 3 (.1) Lus10035546 [exp] 568 / 0 AT3G09220 710 / 0.0 laccase 7 (.1) Lus10027747 [exp] 566 / 0 AT3G09220 707 / 0.0 laccase 7 (.1) Lus10002227 [exp] 561 / 0 AT5G03260 926 / 0.0 laccase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G073700 [exp] 896 / 0 AT2G40370 946 / 0.0 laccase 5 (.1) Potri.010G183600 [exp] 891 / 0 AT2G40370 937 / 0.0 laccase 5 (.1) Potri.010G183500 [exp] 857 / 0 AT5G05390 915 / 0.0 laccase 12 (.1) Potri.008G073800 [exp] 843 / 0 AT5G05390 893 / 0.0 laccase 12 (.1) Potri.013G152700 [exp] 748 / 0 AT2G30210 916 / 0.0 laccase 3 (.1) Potri.019G124300 [exp] 736 / 0 AT2G30210 845 / 0.0 laccase 3 (.1) Potri.006G094100 [exp] 574 / 0 AT3G09220 691 / 0.0 laccase 7 (.1) Potri.006G087500 [exp] 563 / 0 AT5G60020 806 / 0.0 laccase 17 (.1) Potri.006G097100 [exp] 562 / 0 AT2G38080 896 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.016G112000 [exp] 562 / 0 AT2G38080 911 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10017427 pacid=23140140 polypeptide=Lus10017427 locus=Lus10017427.g ID=Lus10017427.BGIv1.0 annot-version=v1.0 ATGGTGGATGCTGGCCGAGCTCGCGGGATATGTTATTCGTTCTTCCTCTCGATCGGCCTTGTGCTGCTTCTGGTTGCTGCTTCACTAGCTAGTGCAAAGA CTCACTCCCATGATTTTGTGGTTCAATCAACGAAAGTCAAGAGGCTATGCAACACCCACAACCCAATTACGGTCAACGGGATGTTCCCCGGACCGACCTT GGAAGTCAACAACGGCGACACCGTCGTTGTTAACGTTGTCAACCGAATTAAACACAACCTCACTATCCACTGGCACGGGGTTAGGCAGATGAGAACAGGA TGGGCAGACGGTCCGGAATTCGTGACACAATGCCCCATTCGACCGGGAAGCAGCTACACTTATCGATTCACGATCGAAGGGCAAGAAGGGACGTTATGGT GGCACGCTCACAGCACGTGGCTTCGAGCCACCGTCTATGGAGCTATGGTCATCTACCCTAAGGAAGGATCAACTTACCCTTTCCCTAAACCTAGACGCCA GACACCAATTCTTCTTGGGGAATGGTGGGATGCCAACCCCATTGATGTCTTGAGGGAAGCAATCAGAAGTGGAGGAGCTCCAAATATTTCAGATGCTTAC ACCATTAATGGCCAACCTGGTGATCTTTACAACTGCTCTAGCAAAGAAACCGCAATAGTCCCGATAGACGTCGGCGAGACAAACCTCCTCCGAGTCATCA ACGCTGCCCTCAATCAGCCACTCTTCTTCGCAATCGGCGGCCACCCTTTCACGGTAGTCGGAGCCGACGCTTCATACGTCAAACCCTTCACAACCTCCGT CATAATGCTAGGCCCCGGCCAGACAACCGACGTCCTAATCTCCGGCAACCAGCTTCCCAACCGTTACTACATGGCAGCAACCGCATACCAAAGCGCACTA AACGCACCGTTTGACAACACCACCGCCACTGCCGTCCTCGAATACAAATCCGCCCCTTGCCCCGCCTCCAAGGGCATTTCGGGCAAACCCGTTATGCCAA TGTTGCCTAAATTCAACGATACCGCTACGGTCACTGCCTTCTCAACCAGCTTTAGGAGTTTAGGAAAAGTCGATAATCTTCCTAAGGAGATTGACGAGGA TCTGTTCGTAACGGTTGGGCTTGGGCTTAATGACTGTCCGCCTTATTATGACTCGGCCCGTTGTCAGGGGCCCAATGGAACTCGATTCACTTCTAGTATG AATAATGTGTCGTTCGTTCTCCCACAGACGACGTCGTTGCTGCAAGCTTATCAGCAGGGGATTCCCGAGGTTTACACTACGGATTTTCCGGTTCAACCTC CGGTTACATTCGATTACACGGGAGATGTGGACCGGGCAATGTGGCAGCCGATAACCGGGACTAAAGTTTACCGGTTGAAATTTGGGTCTAGAGTACAGGT TGTGTTGCAAGACACTAGCATCGTGACGCCCGAGAACCACCCGATTCATCTGCACGGGTACGATTTTTACGTGATTGCGGAGGGATTCGGGAACTTCGAT CCGGATGTCGACACGGCAAAATTCAACCTGGTTGATCCGCCGATGAGGAACACCGTCGCCGTGCCATCGAACGGGTGGGCCGTCATAAGATTCTTGGCTG ATAACCCCGGGATGTGGATAATGCATTGCCATTTGGATGTGCATATAGCTTGGGGATTGGCAATGGCGTTCTTGGTGGAGGAAGGAGATGAAGCAATGCA GACTCTTGAGGCGCCTCCGCTCGATTACCCAATATGTTGA
AA sequence Show only first row Show all	>Lus10017427 pacid=23140140 polypeptide=Lus10017427 locus=Lus10017427.g ID=Lus10017427.BGIv1.0 annot-version=v1.0 MVDAGRARGICYSFFLSIGLVLLLVAASLASAKTHSHDFVVQSTKVKRLCNTHNPITVNGMFPGPTLEVNNGDTVVVNVVNRIKHNLTIHWHGVRQMRTG WADGPEFVTQCPIRPGSSYTYRFTIEGQEGTLWWHAHSTWLRATVYGAMVIYPKEGSTYPFPKPRRQTPILLGEWWDANPIDVLREAIRSGGAPNISDAY TINGQPGDLYNCSSKETAIVPIDVGETNLLRVINAALNQPLFFAIGGHPFTVVGADASYVKPFTTSVIMLGPGQTTDVLISGNQLPNRYYMAATAYQSAL NAPFDNTTATAVLEYKSAPCPASKGISGKPVMPMLPKFNDTATVTAFSTSFRSLGKVDNLPKEIDEDLFVTVGLGLNDCPPYYDSARCQGPNGTRFTSSM NNVSFVLPQTTSLLQAYQQGIPEVYTTDFPVQPPVTFDYTGDVDRAMWQPITGTKVYRLKFGSRVQVVLQDTSIVTPENHPIHLHGYDFYVIAEGFGNFD PDVDTAKFNLVDPPMRNTVAVPSNGWAVIRFLADNPGMWIMHCHLDVHIAWGLAMAFLVEEGDEAMQTLEAPPLDYPIC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40370		LAC5	laccase 5 (.1)		Lus10017427 [exp]	0	1
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Lus10018217 [exp]	6.4	0.8709
AT1G64060		RBOHAP108, ATRB...	ARABIDOPSIS THALIANA RESPIRATO...		Lus10032308 [exp]	12.0	0.8296
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10025281 [exp]	12.4	0.8456
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10034811 [exp]	13.0	0.8461
AT3G11600			unknown protein		Lus10043404 [exp]	15.4	0.8106
AT1G68850			Peroxidase superfamily protein...		Lus10013065 [exp]	19.4	0.8418
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Lus10017394 [exp]	23.3	0.8304
AT2G48140		EDA4	embryo sac development arrest ...		Lus10014683 [exp]	28.8	0.8348
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10026331 [exp]	29.0	0.8344
AT5G37690			SGNH hydrolase-type esterase s...		Lus10018641 [exp]	31.2	0.8174

Compare expression of checked genes

Lus10017427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.