Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40260 146 / 1e-40 GARP Homeodomain-like superfamily protein (.1) AT2G38300 135 / 9e-37 GARP myb-like HTH transcriptional regulator family protein (.1) AT2G42660 110 / 2e-28 GARP Homeodomain-like superfamily protein (.1) AT2G02060 93 / 7e-22 GARP Homeodomain-like superfamily protein (.1) AT1G14600 93 / 8e-22 GARP Homeodomain-like superfamily protein (.1) AT5G42630 88 / 3e-20 GARP KAN4, KANADI4, ATS KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) AT4G04580 81 / 3e-18 GARP Homeodomain-like superfamily protein (.1) AT1G32240 84 / 6e-18 GARP KAN2, KANADI2 KANADI 2, Homeodomain-like superfamily protein (.1) AT5G29000 83 / 7e-18 GARP PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) AT4G28610 83 / 1e-17 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007513 [exp] 426 / 1e-150 AT2G40260 145 / 3e-40 Homeodomain-like superfamily protein (.1) Lus10040945 [exp] 171 / 2e-50 AT2G40260 159 / 2e-45 Homeodomain-like superfamily protein (.1) Lus10012239 [exp] 134 / 1e-36 AT2G38300 170 / 3e-50 myb-like HTH transcriptional regulator family protein (.1) Lus10002207 [exp] 134 / 2e-36 AT2G38300 171 / 9e-51 myb-like HTH transcriptional regulator family protein (.1) Lus10029225 [exp] 101 / 2e-25 AT2G38300 110 / 5e-30 myb-like HTH transcriptional regulator family protein (.1) Lus10001149 [exp] 101 / 1e-24 AT2G40260 119 / 1e-30 Homeodomain-like superfamily protein (.1) Lus10007279 [exp] 98 / 1e-24 AT2G38300 107 / 1e-28 myb-like HTH transcriptional regulator family protein (.1) Lus10022886 [exp] 91 / 7e-20 AT4G28610 310 / 7e-102 phosphate starvation response 1 (.1) Lus10024938 [exp] 89 / 2e-19 AT4G28610 314 / 2e-103 phosphate starvation response 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G185700 [exp] 168 / 5e-49 AT2G40260 188 / 5e-56 Homeodomain-like superfamily protein (.1) Potri.008G071700 [exp] 160 / 2e-46 AT2G40260 166 / 2e-47 Homeodomain-like superfamily protein (.1) Potri.016G121800 [exp] 145 / 1e-40 AT2G38300 183 / 1e-54 myb-like HTH transcriptional regulator family protein (.1) Potri.009G075100 [exp] 124 / 8e-33 AT2G38300 162 / 4e-47 myb-like HTH transcriptional regulator family protein (.1) Potri.004G057900 [exp] 117 / 6e-30 AT2G38300 139 / 7e-38 myb-like HTH transcriptional regulator family protein (.1) Potri.001G280000 [exp] 116 / 1e-29 AT2G38300 140 / 2e-38 myb-like HTH transcriptional regulator family protein (.1) Potri.011G067150 [exp] 111 / 1e-27 AT2G38300 128 / 1e-33 myb-like HTH transcriptional regulator family protein (.1) Potri.008G142000 [exp] 103 / 2e-25 AT1G14600 130 / 2e-36 Homeodomain-like superfamily protein (.1) Potri.010G099600 [exp] 100 / 3e-24 AT1G14600 126 / 9e-35 Homeodomain-like superfamily protein (.1) Potri.011G006350 [exp] 99 / 5e-24 AT2G02060 115 / 8e-31 Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10017442 pacid=23140216 polypeptide=Lus10017442 locus=Lus10017442.g ID=Lus10017442.BGIv1.0 annot-version=v1.0 ATGCCGAGGCTTAGGTGGACCCCGGATCTTCATCTATCCTTTCTCCAAGCTGTTGACAGACTCGGCGGCCAAGACAGAGCAACCCCAAAGCTGGTTCTTC AACTCATGAACATCAAAGGACTCAGCATCGCTCATGTGAAAAGCCATCTCCAGATGTACAGAAGCAAGAAGTTTGATGATCCAAATCAAGGTAATGTGCA AGGTCTTTTATTTCAAGGGAAGGATAACCATGCCTACAACCTAAGCCAGCTTCCAATGCTTCAAAGATTCAACCATGGCCCTCCCTCACCTGCTAATTCT AGGTACGGAGATTACTCATCATGGAGGAGAGGGCACAACATATGTGGAACAAACTACATGGGAGGAGGAAGGTTAGGAGGCAACAACTCAAGTAGCCTTT ATGGTTACAACAATCACAAGCCATTCACTACTAAGTACTCATCATGTGATTCTTCACCCAACAACAACATTAATCTTCCTTCTTCCCTCATGCTCAAAGG AATACAAGTACCAATATCAATCAAAAGTAGTACTAGTACCACTACTACTCTCCCCAACCACCACTCAACTACCTTTGAGAACACCAACACCAAGTTCTTA TTCCATAGATGGCCACCCCAAATCCTCACCAAGCTCGCATCCCCGGCCTTGGAAGAATCTACTTCCAACGACATTATAAACGGTGGGCTCAAGAGGAAAC TAATGTCAATGCGACCGGTTCGTTCTGGTGATCATGACTTGGATTTGGAGCTGTCTCTGAAGGTGTCGAAACCGGCCAAGGTGGACATGAGAGGTAATGA TTATGATGCTGTTAATGTTGTTGATCTCGATCCGGAGAGTACTCTGTCTCTGTCTCTGTCGTCTTCTTCGTCTTCGAAGCTGAGTGAAGTTGTTAGGAGA GACAATAAGTATAATAGTAGTATTGTTATGAATGAGGGTGTTGATAGTAAGCGTGCCAGGATGGCAAGTACTCTAGATCTGACTTTGTGA
AA sequence Show only first row Show all	>Lus10017442 pacid=23140216 polypeptide=Lus10017442 locus=Lus10017442.g ID=Lus10017442.BGIv1.0 annot-version=v1.0 MPRLRWTPDLHLSFLQAVDRLGGQDRATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKFDDPNQGNVQGLLFQGKDNHAYNLSQLPMLQRFNHGPPSPANS RYGDYSSWRRGHNICGTNYMGGGRLGGNNSSSLYGYNNHKPFTTKYSSCDSSPNNNINLPSSLMLKGIQVPISIKSSTSTTTTLPNHHSTTFENTNTKFL FHRWPPQILTKLASPALEESTSNDIINGGLKRKLMSMRPVRSGDHDLDLELSLKVSKPAKVDMRGNDYDAVNVVDLDPESTLSLSLSSSSSSKLSEVVRR DNKYNSSIVMNEGVDSKRARMASTLDLTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10017442 [exp]	0	1
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10007513 [exp]	1.4	0.9708
AT2G24370			Protein kinase protein with ad...		Lus10040573 [exp]	2.0	0.9571
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Lus10033875 [exp]	2.2	0.9479
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10010871 [exp]	3.9	0.9566
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10030966 [exp]	6.9	0.9479
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Lus10003039 [exp]	7.9	0.9426
					Lus10002465 [exp]	8.0	0.9492
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10039686 [exp]	8.7	0.9281
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10033400 [exp]	8.8	0.9406
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028897 [exp]	8.9	0.9421

Compare expression of checked genes

Lus10017442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.