Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10420 800 / 0 SPD1 SEEDLING PLASTID DEVELOPMENT 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G73170 526 / 5e-178 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G33290 372 / 3e-122 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028811 [exp] 1229 / 0 AT3G10420 830 / 0.0 SEEDLING PLASTID DEVELOPMENT 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10012291 [exp] 541 / 0 AT1G73170 712 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10015985 [exp] 540 / 0 AT1G73170 717 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G228600 [exp] 919 / 0 AT3G10420 819 / 0.0 SEEDLING PLASTID DEVELOPMENT 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G375900 [exp] 558 / 0 AT1G73170 717 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10017471 pacid=23163122 polypeptide=Lus10017471 locus=Lus10017471.g ID=Lus10017471.BGIv1.0 annot-version=v1.0 ATGGCTCTTTGCGCTAAGCACATCCGTTACGTTTCATTACACTCAGGAACAAAATCAAACAGTTTGAAACCGGAGATCCTTTGGAATCTTCTCTTCTTAC CCTTCCTTACAAATTCTCCCACCAAAAACTTCATCACTTTCCCACCACCACACAAAGCAGAGTACCAGACCCCCCCAAAAATGAAAGCTTTGAACTCGCA TTTCTGGCTCATCGATCGCCAGAGCACCTCCTGCTCAGTTCGTCAAATCCCACTATCAACCGTCACTTACCTTTCCAACGTCTCTTCCTCGTCATTCCGT CGAACACCTGGTGTTCACAGCAGCAGGCGAGCTGCATCTTCCAAATTGCTGCTGCCCGCCGCTGTTTGGGCGCCTGAGATCCGGAAACCCACTGATCGGT GCAGTCCGGGAAATGGATTGGTATCCGAATTCGGAAATTCGCCTTCCATTTCTACTTCTTCCGCCGCTGCTAACGTTTCGGAGTTGGATATGTTTCTTGA ATTGGTGCCGTCGAGAATGAGGAAGGCGCTTTCCGAGCATAGTGAGATCCATCACTTGATTGAAGTGGTTATGGACTTGGGTAGGAGTCCTCTTGCTAGG TTTCCATCGGGAGATTGGCCGATTTCGGATCAGCCCGTGAAGCATGAGGATTTGAAGCATGCAGTAGCAAAGGTTGGTGATTTCTCTGATGACAACCGTT CGGGCATTAACAGTTCTCTGCATCGTATAAGTGCTATTAGAAACCGTAAAATGCAAATTATAGGCCTCACATGTCGAGTGGGGCGAGCTGTGGGTGGAAG TGCAGAGATTATCCGTGACTTGATCGCTGGTGGAGGTTCGATCTTGGTCATAGGTCGTCCTGGAGTTGGCAAAACGACGTTAATCAGAGAAATAGCTAGA ATGTTGGCTGATGACCAGGGGAAGCGCGTCATTATAGTGGACACCTCCAACGAAATCGGTGGTGATGGAGATGTTCCTCATTCTGGAATAGGCAGGGCAA GGAGAATGCAGGTTCCTAATGTTCATTTGCAGCACAATGTTATGATTGAAGCGGTGGAAAATCATATGCCCGAGACCATCATAATCGATGAGATTGGAAC TGAGCTGGAGGCCCTAGCTGCAAGCACCATTGCTCAGCGTGGTGTTCAGCTTGTTGGAACGGCTCATGGAATGACCATAGACAATATAATTAAGAATCCT TCCCTGCAACTTCTTGTGGGTGGCATAGAGAGTGTAACTCTTGGTGATGAAGAAGCAAGGAAAAGGAAAGTCCAGAAGACAATTCTAGAGCGGAAAGGGC CTCCTACTTTTACATGTGCTGTTGAAATGATATCGCGAACTGAGTGTCGTGTCCATCATAGGTTAGATGCAACAGTGGATGCTCTACTCGCAGGAAAGAC TCCTCTCTTTGAAATCCGACGGATGGAAACTGAGGAAGATAGTCCTGTGGAGTCTACTCCAGTTTATGCCCAGAACGATGTGGAGGATCCAGAGGTCATG CCTGTAATTGAAGATAAAGAGTATGACAGAAAGTCAGATGCAGAGGATGTAGAGTATGAAAGAAAGTTTGAAGGAGAAGATAGAGATTATGATCCATCTA AATCAAAGAGAAGCAAAACCAATAGATTGGCGATCACAAGGATTGCACCAGTCTGTGTCTACACTTACAAGATCCTTGAAGATGATCTTTTACAAGTTGC AAAGGTAATGGGAGTTGAAGATGACATAGATGCGACTGATGACATCGGAACAGCTGATGCTATTTTGGTATCCAGTTCCGAAATGAAGCAGAATCCGTGG ATCCGCAGTGTAGCCAAGTTCCATCAATTGCCCATATTTGTTATCAAATCAAACACAATGGCGCAGATGGTGAAAGCAGTCCGTACGATTCTCGGGATGG AATCGTTAACCGGTACATCAAAGCAGCCTATCAAGAACATGTTCGACATAGAAATAGAAGGCGATGCGCCAAAAAGGAAGCCAACCTTGGAAGAAATTGA TGCCTTGGAGGAGGTTCGTCTCGCAATAGAGTACATAGTCATCCCCGGTGGAGAACCAGTGGAGCTTCTCCCCAGGCGATCAGAGATTGTTGCTCGGCAG CTGGAGCTTGTGGAAAGCTATCACTTAGCAGCGGAGAACTCAGGCACAGAACTTGAACCCAGGCTGCAGATTTTCCCACTCAGAACAACAAACAAGAAAG CATCATCATCTTCCAAGTCGTTGAAATCCAGTTCATCCTCAAACAAGGAAGCGAGTACGACGCCATTACCTAACAGCAGTGGAAAAGGTACAAGTGTGAG CAGGCTGCCGTTACTGCCTGAATAG
AA sequence Show only first row Show all	>Lus10017471 pacid=23163122 polypeptide=Lus10017471 locus=Lus10017471.g ID=Lus10017471.BGIv1.0 annot-version=v1.0 MALCAKHIRYVSLHSGTKSNSLKPEILWNLLFLPFLTNSPTKNFITFPPPHKAEYQTPPKMKALNSHFWLIDRQSTSCSVRQIPLSTVTYLSNVSSSSFR RTPGVHSSRRAASSKLLLPAAVWAPEIRKPTDRCSPGNGLVSEFGNSPSISTSSAAANVSELDMFLELVPSRMRKALSEHSEIHHLIEVVMDLGRSPLAR FPSGDWPISDQPVKHEDLKHAVAKVGDFSDDNRSGINSSLHRISAIRNRKMQIIGLTCRVGRAVGGSAEIIRDLIAGGGSILVIGRPGVGKTTLIREIAR MLADDQGKRVIIVDTSNEIGGDGDVPHSGIGRARRMQVPNVHLQHNVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIIKNP SLQLLVGGIESVTLGDEEARKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDALLAGKTPLFEIRRMETEEDSPVESTPVYAQNDVEDPEVM PVIEDKEYDRKSDAEDVEYERKFEGEDRDYDPSKSKRSKTNRLAITRIAPVCVYTYKILEDDLLQVAKVMGVEDDIDATDDIGTADAILVSSSEMKQNPW IRSVAKFHQLPIFVIKSNTMAQMVKAVRTILGMESLTGTSKQPIKNMFDIEIEGDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEPVELLPRRSEIVARQ LELVESYHLAAENSGTELEPRLQIFPLRTTNKKASSSSKSLKSSSSSNKEASTTPLPNSSGKGTSVSRLPLLPE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10420		SPD1	SEEDLING PLASTID DEVELOPMENT 1...		Lus10017471 [exp]	0	1
AT3G10420		SPD1	SEEDLING PLASTID DEVELOPMENT 1...		Lus10028811 [exp]	1.0	0.9630
AT3G52740			unknown protein		Lus10021366 [exp]	1.4	0.9536
AT5G49740		ATFRO7, FRO7	ferric reduction oxidase 7 (.1...		Lus10012161 [exp]	2.4	0.9382
AT3G52740			unknown protein		Lus10017046 [exp]	4.0	0.9343
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Lus10005798 [exp]	5.9	0.9207
AT4G26850		VTC2	mannose-1-phosphate guanylyltr...		Lus10009725 [exp]	6.5	0.8795
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Lus10038823 [exp]	10.1	0.9180
AT4G27360			Dynein light chain type 1 fami...		Lus10038566 [exp]	13.9	0.8784
AT5G55570			unknown protein		Lus10008950 [exp]	15.2	0.8956
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10017193 [exp]	15.3	0.8903

Compare expression of checked genes

Lus10017471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.