Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45000 760 / 0 AAA-type ATPase family protein (.1.2) AT5G43010 759 / 0 RPT4A regulatory particle triple-A ATPase 4A (.1) AT5G20000 335 / 2e-112 RPT6A AAA-type ATPase family protein (.1) AT5G19990 335 / 3e-112 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT1G53750 332 / 5e-111 RPT1A regulatory particle triple-A 1A (.1) AT2G20140 321 / 2e-106 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT4G29040 321 / 2e-106 RPT2A regulatory particle AAA-ATPase 2A (.1) AT1G53780 323 / 2e-105 peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (.1.2.3) AT5G58290 307 / 2e-101 RPT3 regulatory particle triple-A ATPase 3 (.1) AT3G05530 294 / 4e-96 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028807 [exp] 798 / 0 AT1G45000 748 / 0.0 AAA-type ATPase family protein (.1.2) Lus10017972 [exp] 779 / 0 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2) Lus10041964 [exp] 773 / 0 AT1G45000 752 / 0.0 AAA-type ATPase family protein (.1.2) Lus10017762 [exp] 332 / 3e-111 AT5G19990 797 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10031815 [exp] 333 / 5e-111 AT1G53750 828 / 0.0 regulatory particle triple-A 1A (.1) Lus10031243 [exp] 332 / 3e-109 AT1G53750 841 / 0.0 regulatory particle triple-A 1A (.1) Lus10015524 [exp] 316 / 5e-106 AT2G20140 659 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10011901 [exp] 321 / 1e-104 AT2G20140 844 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10006976 [exp] 311 / 9e-103 AT4G29040 828 / 0.0 regulatory particle AAA-ATPase 2A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G158600 [exp] 781 / 0 AT1G45000 752 / 0.0 AAA-type ATPase family protein (.1.2) Potri.009G120500 [exp] 777 / 0 AT1G45000 744 / 0.0 AAA-type ATPase family protein (.1.2) Potri.002G031400 [exp] 771 / 0 AT1G45000 745 / 0.0 AAA-type ATPase family protein (.1.2) Potri.005G231700 [exp] 768 / 0 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2) Potri.006G216600 [exp] 332 / 6e-111 AT1G53750 804 / 0.0 regulatory particle triple-A 1A (.1) Potri.001G161700 [exp] 331 / 1e-110 AT1G53750 809 / 0.0 regulatory particle triple-A 1A (.1) Potri.008G144100 [exp] 330 / 4e-110 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.018G056600 [exp] 328 / 2e-109 AT1G53750 803 / 0.0 regulatory particle triple-A 1A (.1) Potri.010G098300 [exp] 323 / 8e-108 AT5G19990 768 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.014G194700 [exp] 322 / 8e-107 AT4G29040 829 / 0.0 regulatory particle AAA-ATPase 2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10017475 pacid=23163150 polypeptide=Lus10017475 locus=Lus10017475.g ID=Lus10017475.BGIv1.0 annot-version=v1.0 ATGTCGACAGAAGCCGACGAAGCTGCAAGGCGGCGCACGGTGGAAGCTGATTACAGGAAGAAGCTCCTTCAACGAAGGGAGCTTGAATCTAGAGTTCGCG GAGTGAAAGAGAATTTGCGTAGTTCAAAGAAGGAATTTGCGAAGACCGAGGATGACCTGAAGTCACTGCAGAGTGTTGGACAGATCATTGGTGAAGTGCT TAGGCCGCTTGACAACGAGCGCATGATTGTTAAAGCGAGTAGTGGTCCTAGGTATGTGGTTGGCTGCCGCAGTAAAGTCGACAAAGAAAAGCTCACTGCT GGGACTCGTGTTGTTCTCGATATGACCACTCTTACAATTATGAGGGCTCTTCCCCGCGAAGTTGACCCTGTTGTATATAATATGCTCCACGAAGACCCCG GTAATGTTAGCTACTCGGCTGTTGGAGGGTTGGGAGATCAGATTAGAGAGCTGAGGGAATCTATAGAACTCCCACTTATGAATCCTGAACTCTTCTTGAG AGTGGGGATTAAACCTCCTAAGGGTGTTCTCCTCTATGGACCTCCTGGTACTGGAAAGACATTGTTAGCAAGGGCAATAGCAAGCAACATCGACGCTAAC TTCTTGAAGGTTGTATCTAGTGCTATAATCGACAAGTACATCGGTGAAAGTGCAAGGTTAATTCGAGAGATGTTTAATTATGCTCGCGATCATCAACCAT GCATCATATTTATGGACGAGATTGATGCCATTGGTGGACGCCGTTTTAGTGAGGGGACGAGTGCTGACCGTGAAATTCAGCGAACACTCATGGAATTACT TAATCAGTTGGATGGTTTTGACCAGCTGGGGAAGGTTAAAATGATCATGGCCACGAACAGACCGGATGTCCTGGATCCTGCACTTCTCCGTCCAGGTCGT CTAGATAGGAAAATTGAGATCCCCTTGCCTAACGAGCAGTCAAGGATGGAAATTCTCAAAATCCATGCTGCAGGCATTGCCAAACACGGTGAAATCGATT ACGAAGCAGTTGTGAAACTAGCCGAGGGATTCAACGGTGCTGATCTTCGCAATGTCTGCACAGAAGCTGGCATGTCTGCGATCCGTGCGGAACGTGATTA TGTCATCCATGAAGATTTCATGAAGGCTGTGAGAAAGTTAAATGAAGCAAAGAAACTCGAATCCAGTTCGCACTATAATGCCGATTTTGGAAAGGACTGA
AA sequence Show only first row Show all	>Lus10017475 pacid=23163150 polypeptide=Lus10017475 locus=Lus10017475.g ID=Lus10017475.BGIv1.0 annot-version=v1.0 MSTEADEAARRRTVEADYRKKLLQRRELESRVRGVKENLRSSKKEFAKTEDDLKSLQSVGQIIGEVLRPLDNERMIVKASSGPRYVVGCRSKVDKEKLTA GTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN FLKVVSSAIIDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGR LDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSSHYNADFGKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45000			AAA-type ATPase family protein...		Lus10017475 [exp]	0	1
AT3G53110		LOS4	LOW EXPRESSION OF OSMOTICALLY ...		Lus10014393 [exp]	3.5	0.9179
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10008632 [exp]	4.6	0.9219
AT2G23070			Protein kinase superfamily pro...		Lus10019296 [exp]	6.7	0.9050
AT5G59830			unknown protein		Lus10025307 [exp]	8.3	0.8608
AT2G32415			Polynucleotidyl transferase, r...		Lus10015114 [exp]	8.5	0.9070
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Lus10005680 [exp]	8.7	0.9120
AT5G22330		ATTIP49A, RIN1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10011283 [exp]	11.3	0.9098
AT3G18860			transducin family protein / WD...		Lus10011296 [exp]	12.7	0.8583
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Lus10027775 [exp]	15.9	0.8867
AT5G49880			mitotic checkpoint family prot...		Lus10024456 [exp]	17.3	0.8596

Compare expression of checked genes

Lus10017475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.