Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64110 1065 / 0 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT4G28000 995 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52882 958 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G02890 463 / 1e-146 AAA-type ATPase family protein (.1.2) AT4G24860 433 / 3e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G02480 419 / 8e-130 AAA-type ATPase family protein (.1) AT1G50140 362 / 9e-111 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G19740 358 / 2e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G62130 335 / 2e-100 AAA-type ATPase family protein (.1) AT4G27680 276 / 5e-85 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028752 [exp] 1488 / 0 AT1G64110 1165 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10024692 [exp] 1250 / 0 AT1G64110 1176 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10027551 [exp] 988 / 0 AT5G52882 1136 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10039309 [exp] 983 / 0 AT5G52882 1140 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10036347 [exp] 413 / 7e-128 AT4G02480 1395 / 0.0 AAA-type ATPase family protein (.1) Lus10010282 [exp] 410 / 1e-126 AT4G02480 1408 / 0.0 AAA-type ATPase family protein (.1) Lus10010204 [exp] 362 / 6e-111 AT3G19740 1242 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017405 [exp] 355 / 7e-108 AT3G19740 1223 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013429 [exp] 341 / 5e-102 AT1G50140 1151 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G097600 [exp] 1089 / 0 AT1G64110 1159 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.003G133700 [exp] 1087 / 0 AT1G64110 1145 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.012G035400 [exp] 998 / 0 AT5G52882 1137 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G026900 [exp] 981 / 0 AT5G52882 1146 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G131000 [exp] 432 / 3e-135 AT1G02890 1432 / 0.0 AAA-type ATPase family protein (.1.2) Potri.002G205900 [exp] 427 / 2e-133 AT1G02890 1445 / 0.0 AAA-type ATPase family protein (.1.2) Potri.012G096300 [exp] 419 / 4e-130 AT4G02480 1153 / 0.0 AAA-type ATPase family protein (.1) Potri.015G094100 [exp] 414 / 6e-128 AT4G02480 1128 / 0.0 AAA-type ATPase family protein (.1) Potri.007G069800 [exp] 345 / 4e-104 AT1G50140 1215 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G093300 [exp] 343 / 1e-103 AT3G19740 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10017535 pacid=23163153 polypeptide=Lus10017535 locus=Lus10017535.g ID=Lus10017535.BGIv1.0 annot-version=v1.0 ATGGAGCAGAAGCAGTTCCTGTTATCGGCATTGGGCGTTGGTGTCGGGGTTGGGGTGGGGCTTGGGTTAGCGTCGCCGACGGTAAGCAAATGGACCGGCG GAAATGTGCCTCCTACCAACGCTGTCACGGGAGATAAATTGGAGCAAGAAATGCTCCGCCAAGTGATTCACGGAAGAGAAAGCGGCGTTACATTTGCCGA ATTTCCTTATTTCCTCAGTGAGCAGACTCGAGTATTGCTGACGAGTGCTGCATATGTACACTTGAAACATGCGGAAGTTTCAAAGTACACAAGGAACCTT TCCCCTGCTAGTCGAACTATACTGCTCTCTGGCCCTGCAGAATCTTACCAGCAAATGCTTGCCAAGGCATTAGCTCATTACTTTGATGCCAAACTGCTGC TATTAGATGTCACCGATTTTTCGCTCAAGCTTTCGCTTCAGATCCAGAGCAAGTACGGCACTAGCAAGGATTCAATACGGAGGTCTACTTCAATGGAGCG ACTATCCGGCTTCCTGGGATCATTGTCAATACTGCCGCAAGAAAAGGAACCCAGAGGCACTGGTGCACTACATAGGCAACACAGTGGAGTGGATCTCTCA TCATCAAGAGGGATGGAAGGTTCCTCGAATTTTCCAAAGCTACGGCGGAACTCCTCTGCCTCTGCTAATATGAACTTGCTTGCCTCGCAATCTGCTTCTG GACCTACAGCTCCTTTGAGGCGACAAAGCAGTTTGTCTGTTGATGAGAGGCTTCTGATACAATCTCTTTACAAGGTGCTGGTTTATGTCTCCAAAAGTAG TCCAATCGTGCTGTATCTTAGGGATATCGACAAGTTCTTATCAAGGTCGCAAAGAATCTACAACTTGTTCCACAAAATGGTAAAGAAGTTGTGTGGTTCA GTGCTGATTCTTGGATCGAGAAGCATAGACTTGGAAAATGATGACAGGGAGCCGGATGAAACGCTCACTCTTCTGTTCCCATATAACATCGAGATCAAGC CTCCTGAAGATGCGAACCAGCATCTCAACTGGAAGTCCCAACTTGAGGAGGATATGAAGATGATCCAGGTTCAGGACAATAGAAACCACATCATGGAGGT CCTTTCATCCAATGATCTTGACTGTGATGATCTGGATTCCATCTGTATGGCAGACACGGTGGTTCTTGGAAACTACATTGAAGAAATAGTTGTGTCTGCC ATTTCTTATCATCTTATGAATAATAAGGACCCTGATTACCGTAGTGGAAAACTTATCATATCATCCAAGAGTTTGTCCCATGGGTTGAGCATTTTCCAAG GGAAACCTGTTGGTAATACTCTCAAGTTAGAAGCTCAGGCTGAACTTCCAAAGAAAGAAGGGAACGAGCCTATAGCTGCCGTGAAACCAGAAACAAAATC TGACACCGTAATTCCAGAAAAGAAGATCGATGCTGGCACACCAAAGGCTGATGCTGCTGTGCCAGCGCCATCAAAAGTTGTTGAGGTTGCTCCAGACAAT GAATTCGAGAAGCGCATAAGGCCAGAAGTGATACCAGCAAACGAGATCAATGTAACCTTCGCGGACATTGGTTCTCTGGAGGAGACAAAGGAGTCCCTTC AGGAACTAGTGATGCTTCCCCTAAGACGACCTGACTTGTTCAAGGGGGGACTTCTGAAGCCCTGCAGGGGAATTTTGCTATTCGGACCTCCTGGTACAGG GAAGACAATGCTGGCCAAGGCCATTGCCAGGGAAGCTGGTGCCAGCTTCATTAATGTGTCGATGTCGACCATCACATCGAAATGGTTCGGTGAAGATGAA AAGAATGTCCGAGCATTGTTCTCTCTGGCGTCCAAAGTCTCCCCAACGATCATCTTTGTGGATGAGGTCGATAGCATGCTTGGTCAGCGAACAAGGGTGG GAGAGCATGAAGCAATGAGGAAGATCAAGAACGAGTTCATGACTCATTGGGACGGTCTGGCTACCAAACAAGGGGAGCGTATCCTGGTTCTTGCTGCTAC TAACCGGCCGTTTGATCTTGATGAGGCTATAATCAGGCGTTTTGAGCGCAGGATAATGGTGGGACTACCTTCCGTGGAGAATAGGGAAATGATTATGAAG ACTTTGTTGTCGAAGGAAAAGGTTGATGAACGACTGGATTTCAAGGAGCTGGCAACCCTGACAGATGGGTTCTCAGGAAGTGATCTCAAGAACCTGTGTA CTACCGCTGCTTATCGGCCAGTCAGAGAGTTGATACAGCAGGAAAGGAAACACATGGAGAAAAAGAAAGCTTCAGAAGCACAAAACTCAGGTGAAGCTGC TGAGAAACCCAAGGAGGATAGAGTAATCAGCCTCCGGGCATTGGACATGGAAGATTTCAGGCTGGCTAAGAACCAGGTGTCATCGAGTTTTGCAGCAGAA GGGTCTATAATGTCGGAGTTAAAGCAATGGAACGACTTGTATGGTGAAGGTGGATCCAGGAAAAAGGAACAGTTGTCCTACTTCTTGTGA
AA sequence Show only first row Show all	>Lus10017535 pacid=23163153 polypeptide=Lus10017535 locus=Lus10017535.g ID=Lus10017535.BGIv1.0 annot-version=v1.0 MEQKQFLLSALGVGVGVGVGLGLASPTVSKWTGGNVPPTNAVTGDKLEQEMLRQVIHGRESGVTFAEFPYFLSEQTRVLLTSAAYVHLKHAEVSKYTRNL SPASRTILLSGPAESYQQMLAKALAHYFDAKLLLLDVTDFSLKLSLQIQSKYGTSKDSIRRSTSMERLSGFLGSLSILPQEKEPRGTGALHRQHSGVDLS SSRGMEGSSNFPKLRRNSSASANMNLLASQSASGPTAPLRRQSSLSVDERLLIQSLYKVLVYVSKSSPIVLYLRDIDKFLSRSQRIYNLFHKMVKKLCGS VLILGSRSIDLENDDREPDETLTLLFPYNIEIKPPEDANQHLNWKSQLEEDMKMIQVQDNRNHIMEVLSSNDLDCDDLDSICMADTVVLGNYIEEIVVSA ISYHLMNNKDPDYRSGKLIISSKSLSHGLSIFQGKPVGNTLKLEAQAELPKKEGNEPIAAVKPETKSDTVIPEKKIDAGTPKADAAVPAPSKVVEVAPDN EFEKRIRPEVIPANEINVTFADIGSLEETKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAREAGASFINVSMSTITSKWFGEDE KNVRALFSLASKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLATKQGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREMIMK TLLSKEKVDERLDFKELATLTDGFSGSDLKNLCTTAAYRPVRELIQQERKHMEKKKASEAQNSGEAAEKPKEDRVISLRALDMEDFRLAKNQVSSSFAAE GSIMSELKQWNDLYGEGGSRKKEQLSYFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64110		DAA1	DUO1-activated ATPase 1, P-loo...		Lus10017535 [exp]	0	1
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10035319 [exp]	5.5	0.8471
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10030003 [exp]	7.9	0.8449
AT2G35150		EXL7, EXL1	EXORDIUM LIKE 7, EXORDIUM like...		Lus10017138 [exp]	9.8	0.8128
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10035320 [exp]	10.4	0.8358
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10007268 [exp]	12.5	0.8350
					Lus10010435 [exp]	14.8	0.8133
AT5G46700		TRN2, TET1	TORNADO 2, TETRASPANIN 1, Tetr...		Lus10017336 [exp]	15.5	0.7713
AT5G38300			unknown protein		Lus10033566 [exp]	16.0	0.8018
AT3G22440			FRIGIDA-like protein (.1)		Lus10010560 [exp]	16.3	0.8096
AT1G47840		HXK3	hexokinase 3 (.1)		Lus10002041 [exp]	17.3	0.7456

Compare expression of checked genes

Lus10017535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.