Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23750 149 / 1e-42 AP2_ERF TMO3, CRF2 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) AT4G11140 142 / 2e-40 AP2_ERF CRF1 cytokinin response factor 1 (.1) AT4G27950 137 / 3e-38 AP2_ERF CRF4 cytokinin response factor 4 (.1) AT5G53290 123 / 1e-32 AP2_ERF CRF3 cytokinin response factor 3 (.1) AT2G46310 109 / 6e-28 AP2_ERF CRF5 cytokinin response factor 5 (.1) AT3G61630 105 / 3e-26 AP2_ERF CRF6 cytokinin response factor 6 (.1) AT1G71130 99 / 3e-25 AP2_ERF CRF8 cytokinin response factor 8, Integrase-type DNA-binding superfamily protein (.1) AT1G68550 91 / 5e-21 AP2_ERF CRF10 cytokinin response factor 10, Integrase-type DNA-binding superfamily protein (.1.2) AT5G13330 87 / 2e-20 AP2_ERF RAP2.6L related to AP2 6l (.1) AT2G33710 86 / 6e-20 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032353 [exp] 220 / 4e-70 AT4G23750 207 / 2e-64 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10033938 [exp] 220 / 4e-70 AT4G23750 201 / 6e-62 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10027573 [exp] 158 / 1e-45 AT4G27950 209 / 1e-64 cytokinin response factor 4 (.1) Lus10039324 [exp] 145 / 1e-40 AT4G27950 210 / 8e-65 cytokinin response factor 4 (.1) Lus10018756 [exp] 113 / 1e-27 AT1G64280 506 / 2e-170 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) Lus10014054 [exp] 94 / 3e-22 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10003037 [exp] 88 / 2e-20 AT2G46310 122 / 8e-34 cytokinin response factor 5 (.1) Lus10005149 [exp] 86 / 5e-20 AT4G27950 106 / 6e-28 cytokinin response factor 4 (.1) Lus10000543 [exp] 81 / 8e-20 ND 41 / 6e-06
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G136300 [exp] 201 / 2e-62 AT4G11140 160 / 1e-46 cytokinin response factor 1 (.1) Potri.001G094800 [exp] 200 / 4e-62 AT4G23750 177 / 2e-52 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Potri.012G032900 [exp] 145 / 5e-41 AT4G27950 214 / 6e-67 cytokinin response factor 4 (.1) Potri.015G023200 [exp] 144 / 1e-40 AT4G27950 211 / 9e-66 cytokinin response factor 4 (.1) Potri.002G167400 [exp] 138 / 1e-38 AT4G27950 162 / 3e-47 cytokinin response factor 4 (.1) Potri.019G131300 [exp] 135 / 2e-37 AT4G27950 139 / 2e-38 cytokinin response factor 4 (.1) Potri.014G094500 [exp] 132 / 2e-36 AT2G46310 163 / 3e-48 cytokinin response factor 5 (.1) Potri.013G158500 [exp] 121 / 3e-32 AT4G27950 124 / 1e-32 cytokinin response factor 4 (.1) Potri.010G006800 [exp] 90 / 5e-21 AT3G16770 130 / 5e-37 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.001G067600 [exp] 85 / 2e-19 AT5G13330 130 / 1e-37 related to AP2 6l (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10017550 pacid=23163188 polypeptide=Lus10017550 locus=Lus10017550.g ID=Lus10017550.BGIv1.0 annot-version=v1.0 ATGGAAGGTGATTTTCCCTCCGTTGCGCCGGTCAAGTTCAGCGAGTACCAAAATACAACCAAGCTCCTTCGTAGAACATCTTCGTCGGCCCACGACTCTG CTCAGTCGGAGTTCAAACCGCCGCAGGTTGTCAGGATATCTGTAATCGACCCAAACGCCACGGACTCATCCAGCGACGAAGAAGAAAAGGAGTTTCTTCG TCCCTTCAGGCAGCGGCAGCGGAGGGTGAAGAAATTCGTAAGCGAGATTACGGTGGTGGAGGAGTCTTGTTCCTGTTCCGGTGCGCATCAATACGGCGCC GTTGGTGGTGCCATGAGGTCAGAGTTGAAAAAATCGAAATCCGGAGATTTGCCGACGGCAGCAGCAGGGAGAAGGAAGTTCAGAGGGGTTCGCCAACGGC CGTGGGGGAAATGGGCGGCTGAGATCAGAGACCCCTTCAGGCGCACGCGTCTCTGGCTGGGCACGTACGATACGGCGGAAGAGGCTGCTGCGGTTTACGA CAACGCGGCTCTCCAGCTGCGTGGACCCCACGCGGTCACCAACTTCGTCAACCCGGTTAACTCGCCGATTTCAACTCTCCGGTTCCCGTCTCCGTCAGGA GAATCGCGGAGTACACCGGTTAAAGAGGAGTGCTGCTACGATGAATTTACCGAGTTTTCCTCCTTAGACGCGTTGTTGGCCACCGAGGCGTACGAATTTA ACAACTCCATGAGGGAGATTTTTGAGGAGACGACTGACATGGCTGTGGATGGGTTCCTGAATGACGACGTGTTTTCGAGCTCCGTCGACTTGGGGTTGGG GTTGTCCAGCTGGAGGCCTGACGATTGTTTTAAGGACATCGGCGAGTTGTTTGACTCGGATTCTCTGCTCGCCGCTTGA
AA sequence Show only first row Show all	>Lus10017550 pacid=23163188 polypeptide=Lus10017550 locus=Lus10017550.g ID=Lus10017550.BGIv1.0 annot-version=v1.0 MEGDFPSVAPVKFSEYQNTTKLLRRTSSSAHDSAQSEFKPPQVVRISVIDPNATDSSSDEEEKEFLRPFRQRQRRVKKFVSEITVVEESCSCSGAHQYGA VGGAMRSELKKSKSGDLPTAAAGRRKFRGVRQRPWGKWAAEIRDPFRRTRLWLGTYDTAEEAAAVYDNAALQLRGPHAVTNFVNPVNSPISTLRFPSPSG ESRSTPVKEECCYDEFTEFSSLDALLATEAYEFNNSMREIFEETTDMAVDGFLNDDVFSSSVDLGLGLSSWRPDDCFKDIGELFDSDSLLAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23750	AP2_ERF	TMO3, CRF2	TARGET OF MONOPTEROS 3, cytoki...		Lus10017550 [exp]	0	1
					Lus10000543 [exp]	1.0	0.8793
AT5G13100			unknown protein		Lus10015761 [exp]	8.2	0.7764
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10021044 [exp]	12.5	0.7292
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10038755 [exp]	17.0	0.7661
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Lus10021334 [exp]	17.2	0.7577
AT3G61700			Plant protein 1589 of unknown ...		Lus10039340 [exp]	19.0	0.7188
AT1G44835			YbaK/aminoacyl-tRNA synthetase...		Lus10028064 [exp]	30.7	0.7726
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10021302 [exp]	32.2	0.7713
AT5G67420	AS2	ASL39, LBD37	ASYMMETRIC LEAVES2-LIKE 39, LO...		Lus10018697 [exp]	37.3	0.6734
AT3G63430			unknown protein		Lus10003090 [exp]	42.6	0.7713

Compare expression of checked genes

Lus10017550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.