Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16420 582 / 0 PRZ1, ADA2B PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) AT3G07740 443 / 7e-151 HXA2, HXA02, HAC10, ATADA2A, ADA2A homolog of yeast ADA2 2A (.1.2.3.4) AT4G34430 62 / 1e-09 ATSWI3D, CHB3 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) AT1G21700 59 / 5e-09 CHB4, ATSWI3C SWITCH/sucrose nonfermenting 3C (.1) AT2G33610 43 / 0.0005 CHB2, ATSWI3B CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000540 [exp] 883 / 0 AT3G07740 499 / 2e-174 homolog of yeast ADA2 2A (.1.2.3.4) Lus10006383 [exp] 535 / 0 AT3G07740 581 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4) Lus10023583 [exp] 82 / 6e-16 AT4G34430 704 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10040472 [exp] 79 / 5e-15 AT4G34430 694 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10026334 [exp] 72 / 5e-13 AT1G21700 556 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10042329 [exp] 71 / 1e-12 AT4G34430 652 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10042734 [exp] 52 / 1e-06 AT1G21700 736 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10029695 [exp] 51 / 2e-06 AT1G21700 666 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10016043 [exp] 43 / 0.0006 AT2G33610 429 / 4e-147 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G017300 [exp] 730 / 0 AT4G16420 640 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.016G007600 [exp] 709 / 0 AT4G16420 602 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.014G166300 [exp] 566 / 0 AT3G07740 582 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4) Potri.004G135400 [exp] 100 / 1e-24 AT4G16420 102 / 9e-26 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.009G114900 [exp] 61 / 3e-09 AT4G34430 727 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.002G080600 [exp] 59 / 6e-09 AT1G21700 679 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.004G153300 [exp] 59 / 7e-09 AT4G34430 711 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.005G180800 [exp] 59 / 9e-09 AT1G21700 692 / 0.0 SWITCH/sucrose nonfermenting 3C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0006 [flax] [poplar] C1 PF00569 [flax] [poplar] ZZ Zinc finger, ZZ type CL0123 [flax] [poplar] HTH PF04433 [flax] [poplar] SWIRM SWIRM domain CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10017553 pacid=23163159 polypeptide=Lus10017553 locus=Lus10017553.g ID=Lus10017553.BGIv1.0 annot-version=v1.0 ATGCAAGGAGCTCAATTAACCGGGGAAGTTCATCCAATCGGGGAACCTTTGGATTGTCTGTCTAATGAGGGGATTCAGAATGTTGTGCTTATAAGAATAG CTTCTTGCTTGAAGTGGTGGCAAGTTACAGGTGAAGGGAAAAGGGCACTGTACCATTGTAATTACTGCAACAAAGATATAACCGGGAAGATCCGTATCAA GTGTGCTATGTGCCCTGATTTCGATCTGTGTATCGAGTGTTTTTCTGTTGGAGCTGAGATGACACCACATAAAAGCAGTCACCCTTATAGGGTTATGGAT AATTTGTCTTTCCCACTTATATGTCCCGACTGGAATGCGGATGATGAAATTCTGCTTCTGGAGGGGATTGAAATGTATGGCATGGGGAACTGGACAGAAG TTGCTGAGCATGTAGGAACAAAGAGCAAAGACACGTGCATTGAACATTACAACAATGTTTATATGAACTCCCCTTACTTCCCTCTCCCGGACATGTCCCA TGTTGTTGGAAAGAATAGAAAAGAGCTTCTTGCCATGGCAAAAGGGTCTTCCATGCACGGGGAGCACAATTTGAAGGAAGAATCTCCGTTTTCTCCCACT AGAGTCAAAACTGAAGGTGGCTACTCTGGACGTTTATTGTCTCCATTAAATGCTGGTGATCTTAGTATCTATGAAGCTACTGATGTGGAGTCAGGGGGGC GTCCCACAAGTGCAACGACTGCTGGTAAAAAGACATCTGGCATGCCCCGGGTTAAAGATAGCCCAAATAACGTCAAAGTGGAAGATCCTCCCATAGAAAG GAGTTCCAAAGGGAAGAAACCAAATTGTGTAGCTGACGGTCCATCTTTAGTTGACTTGAGTGGTTACAACTCTAAAAGGCGGGAGTTTGATCCAGAGTAT GACAATGATGCTGAGCAGCTACTAGCCGAGATGGAGTTTAAAGATAATGACACGGAGGAAGAGCGCGAGTTAAAGTTGCGTGTTTTGCGTATTTATGGAA AGAGGCTTGATGAAAGAAAGCGTAGAAAGGATTTCATCTTGGAAAGAAACTTACTGTATCCTAATCCATTCGAGAGGGACTTGTCCCCTGATGAGAGGAT AATCTGTCGACGTTATGACATATTTATGAGATTTCATTCTAAGGAAGAACACGAGGAATTGCTCAGGACAGTCATCACTGAGCACCGAACTCTAAAAAGA ATCCAAGAGTTGAAGGAAGCACGAACTGCTGGCTGCCGGACATCTATCGAGGCAGACAGATACCTTGAACATAAACGGAAAAGGGAAGCGGAGGAGAGTT CTCGTCGAGTAAAAGAAGGCTCACAAGGTGGTATGGCTTCCGAACCAATAGGCAAGGATTCAAATGGAAGACCTGCAGGGCAAGGGTCGTCGAGCTATGT GAACGATCTGGACATCACGGCATTTTTCGACACCCAGTTGCTGTCTGAAGCTGAGAAACGCCTATGCTTCGAGATTAGGTTGCCTCCGCCACTATATCTC CAGATGCAGGAGGTGATGACGAAAGAAATCTTCTGCGGGAATGTTTCAAAGAAGTCGGATGCTCATCCGCTGTTCAAGATCGATGCCAGCAAGGTGGATA GAGTGTATGATGTCCTTGTCAAGAAAGGGATAGCTCAGCCATGA
AA sequence Show only first row Show all	>Lus10017553 pacid=23163159 polypeptide=Lus10017553 locus=Lus10017553.g ID=Lus10017553.BGIv1.0 annot-version=v1.0 MQGAQLTGEVHPIGEPLDCLSNEGIQNVVLIRIASCLKWWQVTGEGKRALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEMTPHKSSHPYRVMD NLSFPLICPDWNADDEILLLEGIEMYGMGNWTEVAEHVGTKSKDTCIEHYNNVYMNSPYFPLPDMSHVVGKNRKELLAMAKGSSMHGEHNLKEESPFSPT RVKTEGGYSGRLLSPLNAGDLSIYEATDVESGGRPTSATTAGKKTSGMPRVKDSPNNVKVEDPPIERSSKGKKPNCVADGPSLVDLSGYNSKRREFDPEY DNDAEQLLAEMEFKDNDTEEERELKLRVLRIYGKRLDERKRRKDFILERNLLYPNPFERDLSPDERIICRRYDIFMRFHSKEEHEELLRTVITEHRTLKR IQELKEARTAGCRTSIEADRYLEHKRKREAEESSRRVKEGSQGGMASEPIGKDSNGRPAGQGSSSYVNDLDITAFFDTQLLSEAEKRLCFEIRLPPPLYL QMQEVMTKEIFCGNVSKKSDAHPLFKIDASKVDRVYDVLVKKGIAQP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10017553 [exp]	0	1
AT1G49350			pfkB-like carbohydrate kinase ...		Lus10010290 [exp]	1.0	0.9539
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10018987 [exp]	2.2	0.9361
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Lus10021784 [exp]	2.4	0.9420
AT5G54890			RNA-binding CRS1 / YhbY (CRM) ...		Lus10040080 [exp]	2.6	0.9279
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10030738 [exp]	2.8	0.9385
AT4G31460			Ribosomal L28 family (.1)		Lus10013249 [exp]	4.1	0.9200
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Lus10025393 [exp]	4.9	0.9113
AT5G44090			Calcium-binding EF-hand family...		Lus10008247 [exp]	4.9	0.9331
AT2G01220			Nucleotidylyl transferase supe...		Lus10032989 [exp]	5.2	0.9406
AT2G04560		AtLpxB	lipid X B, transferases, trans...		Lus10035357 [exp]	5.3	0.9093

Compare expression of checked genes

Lus10017553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.