Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17230 560 / 0 GRAS SCL13 SCARECROW-like 13 (.1) AT5G48150 478 / 5e-165 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G50600 464 / 2e-158 GRAS SCL5 scarecrow-like 5 (.1) AT2G04890 431 / 8e-148 GRAS SCL21 SCARECROW-like 21 (.1) AT1G21450 362 / 2e-118 GRAS SCL1 SCARECROW-like 1 (.1) AT1G66350 198 / 6e-57 GRAS RGL1 RGA-like 1 (.1) AT1G07530 201 / 2e-56 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT3G03450 197 / 2e-56 GRAS RGL2 RGA-like 2 (.1) AT1G14920 197 / 4e-56 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT5G52510 195 / 1e-54 GRAS SCL8 SCARECROW-like 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000539 [exp] 994 / 0 AT4G17230 617 / 0.0 SCARECROW-like 13 (.1) Lus10012323 [exp] 508 / 1e-176 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10006369 [exp] 501 / 7e-174 AT5G48150 633 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10016596 [exp] 484 / 6e-167 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10035840 [exp] 425 / 3e-143 AT5G48150 498 / 2e-172 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10036623 [exp] 410 / 2e-138 AT5G48150 486 / 9e-169 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10003772 [exp] 357 / 6e-121 AT5G48150 439 / 2e-154 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10042776 [exp] 363 / 5e-119 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10029747 [exp] 362 / 8e-119 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G009700 [exp] 726 / 0 AT4G17230 675 / 0.0 SCARECROW-like 13 (.1) Potri.006G016200 [exp] 700 / 0 AT4G17230 641 / 0.0 SCARECROW-like 13 (.1) Potri.014G164400 [exp] 528 / 0 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.001G361700 [exp] 490 / 2e-169 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.001G409500 [exp] 437 / 4e-148 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.011G131100 [exp] 428 / 2e-144 AT1G50600 505 / 8e-174 scarecrow-like 5 (.1) Potri.005G186500 [exp] 372 / 1e-122 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.002G073400 [exp] 372 / 2e-122 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.001G326000 [exp] 235 / 3e-69 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.017G142400 [exp] 215 / 7e-62 AT5G52510 438 / 7e-146 SCARECROW-like 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10017554 pacid=23163212 polypeptide=Lus10017554 locus=Lus10017554.g ID=Lus10017554.BGIv1.0 annot-version=v1.0 ATGACTCAATCGCAGAAGCATAGGAACTCACCAACTATCCATGGTTTTTACCATCAGCCCATCAAAGAAGAGGATACATTTAGTTTGTCTCAGATCGAAC TTTTAGACAACAACAATATATTCTCCATTGTTGGTAGCCAAGGAGGAGGCCCCAGTATTTCCTTCCAGAACTACAAGGACGAATATTTCACCCTCGAGTC ATCATCCACCACGACTACCACTGGTTTCATCTACGATTCTCCTGGTGTCTCATCATCCAGCCGAAGTCCTTTCTCCCCACAGGGCTCGCTTTCTTGCCTC ACCGATCCTCATCATTCCCCCGATGGCTCTCCAGCGAGCGGATCATCCTACGCCACCGATCCTGGAAACGTGCTCTGGCAGAAATTGAGGGAGATGGAAA TGTCATTGCTGGGTCCCGAATCTGAGAATTTCTGCTTCTCTAACGAATCCCATTCATTAGAAAGGCTGGATGCGGATCAGATTGCGGAGATGATCCCCAG ATTAGATCTCAAGCAAGTGCTGATAGGGTGTGCTCAGGCTATAGATATGGTTGACATAAGTAAAGCTGCAGGTCTAATGCATATGTTGGAGCAAATGGTA TCGGTCTGTGGCGAACCGATACAACGAGTAGGTGCTTACATTTTGGAAGGACTTCGAGCGAGGTTAGAGCTCTCCGGAAGTAGAATCTACCGAGCTTTGA AATGCGATTCTCCAGTAAGTTCTGATCTAATGACTTATATGGGTATACTTTATCAGATATGTCCGTACTGGAAGTTTGCATACATGTCAGCAAATGTCGT TATTCATGAAGCCGTCCAGTATGAACCTAGAATCCACATTATCGATTTCCAGATAGCTCAAGGTAGCCAGTGGATTCCCTTGATACAGTCTCTCGCACGA CGTCCAGGTGGCGCTCCTATAATTCGTATAACTGGAGTCGATGATTCCCAGTCTGCTCATGCTCGCGGTGGGGGGCTTCATATCGTTGGGGAGAGGCTAT CGAAAGTTGCGGCAGAATGCAACGTGGTGTTCGAGTTCCACGACACTGCGATGGAAGGCTGCGAGATTCAGCGAGAGCATCTAAAGGTCGAACCTTTACG GGAGGCAGTGGTGGTGAACCTTCCCTACGTGTTACATCACATGCCGGACGAGAGTGTGAACACTTGGAACCATCGAGATCGGTTGCTTAGGCTGGTGAAG AGCCTTTCGCCGAGGATCGTGACACTAGTCGAGCAAGAATCCAACACCAACACCACTCCTTTCCACCTGAGGTTTTTGGAGACGCTTGAGTACTACACGG CCATGTTCGAATCGATCGATGTCGCTCGCCCTAGAGATGATAAGCAGAGGATAAGCGCTGAGCAGCACTGCGTCGCGAGGGATATAGTCAATGTGATTGC CTGCGAGGGTGCAGAGAGGGTGGAACGACACGAGGTTCTCGGGAAGTGGAGATCGAGGTTCCAGATGGCTGGATTCTCGCAGTATCCATTCAGTTCTTCG GTGACTGCTGCTGTGAGAGATGTGCTGAAGGATTATGATAGGAGGTATAGAGTTGAAGAAAGAGATGGCGCATTGTACCTTTACTGGTTGAGAAGAGCCA TGGGAACTTCTTCTGCTTGGCGGTGA
AA sequence Show only first row Show all	>Lus10017554 pacid=23163212 polypeptide=Lus10017554 locus=Lus10017554.g ID=Lus10017554.BGIv1.0 annot-version=v1.0 MTQSQKHRNSPTIHGFYHQPIKEEDTFSLSQIELLDNNNIFSIVGSQGGGPSISFQNYKDEYFTLESSSTTTTTGFIYDSPGVSSSSRSPFSPQGSLSCL TDPHHSPDGSPASGSSYATDPGNVLWQKLREMEMSLLGPESENFCFSNESHSLERLDADQIAEMIPRLDLKQVLIGCAQAIDMVDISKAAGLMHMLEQMV SVCGEPIQRVGAYILEGLRARLELSGSRIYRALKCDSPVSSDLMTYMGILYQICPYWKFAYMSANVVIHEAVQYEPRIHIIDFQIAQGSQWIPLIQSLAR RPGGAPIIRITGVDDSQSAHARGGGLHIVGERLSKVAAECNVVFEFHDTAMEGCEIQREHLKVEPLREAVVVNLPYVLHHMPDESVNTWNHRDRLLRLVK SLSPRIVTLVEQESNTNTTPFHLRFLETLEYYTAMFESIDVARPRDDKQRISAEQHCVARDIVNVIACEGAERVERHEVLGKWRSRFQMAGFSQYPFSSS VTAAVRDVLKDYDRRYRVEERDGALYLYWLRRAMGTSSAWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Lus10017554 [exp]	0	1
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10035840 [exp]	1.0	0.9751
AT2G23810		TET8	tetraspanin8 (.1)		Lus10019965 [exp]	2.0	0.9674
					Lus10043392 [exp]	2.8	0.9624
AT2G23810		TET8	tetraspanin8 (.1)		Lus10015494 [exp]	3.0	0.9655
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Lus10032919 [exp]	3.9	0.9594
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Lus10028970 [exp]	4.9	0.9551
AT1G18210			Calcium-binding EF-hand family...		Lus10031345 [exp]	5.3	0.9402
AT5G01900	WRKY	ATWRKY62, WRKY6...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10022736 [exp]	5.5	0.9400
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10041660 [exp]	5.7	0.9535
AT3G11760			unknown protein		Lus10021254 [exp]	5.8	0.9371

Compare expression of checked genes

Lus10017554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.