Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03450 658 / 0 GRAS RGL2 RGA-like 2 (.1) AT2G01570 657 / 0 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G14920 657 / 0 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT1G66350 653 / 0 GRAS RGL1 RGA-like 1 (.1) AT5G17490 525 / 0 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT5G48150 236 / 5e-71 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G50600 233 / 8e-69 GRAS SCL5 scarecrow-like 5 (.1) AT3G54220 233 / 5e-68 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT2G04890 218 / 8e-65 GRAS SCL21 SCARECROW-like 21 (.1) AT1G50420 219 / 9e-65 GRAS SCL-3, SCL3 scarecrow-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033583 [exp] 1009 / 0 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10028511 [exp] 580 / 0 AT5G17490 527 / 0.0 RGA-like protein 3 (.1) Lus10017758 [exp] 378 / 1e-124 AT2G01570 454 / 4e-155 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10009133 [exp] 324 / 9e-109 AT1G14920 286 / 3e-95 RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) Lus10041540 [exp] 298 / 3e-92 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 298 / 2e-91 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10022418 [exp] 247 / 1e-75 AT1G50420 592 / 0.0 scarecrow-like 3 (.1) Lus10029592 [exp] 250 / 2e-74 AT1G63100 669 / 0.0 GRAS family transcription factor (.1) Lus10006322 [exp] 245 / 8e-74 AT1G63100 588 / 0.0 GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G125200 [exp] 820 / 0 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 808 / 0 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 719 / 0 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 719 / 0 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.001G326000 [exp] 290 / 2e-89 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.012G093900 [exp] 252 / 2e-76 AT1G66350 257 / 2e-79 RGA-like 1 (.1) Potri.015G091200 [exp] 246 / 4e-74 AT1G66350 256 / 4e-79 RGA-like 1 (.1) Potri.016G027800 [exp] 234 / 6e-71 AT1G14920 244 / 1e-75 RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) Potri.014G164400 [exp] 236 / 4e-70 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.005G095100 [exp] 235 / 5e-70 AT1G66350 252 / 3e-77 RGA-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family CL0063 [flax] [poplar] PF12041 [flax] [poplar] DELLA Transcriptional regulator DELLA protein N terminal
Representative CDS sequence Show only first row Show all	>Lus10017626 pacid=23155516 polypeptide=Lus10017626 locus=Lus10017626.g ID=Lus10017626.BGIv1.0 annot-version=v1.0 ATGAAAAGGAATCATCACCAATCCACCTGCAGCAGCTTTGGTGGCTTCAACCAGGAATCTGCCTCTGCGTCAATGGCGCCGCCGCCGTCCGCCGGGAAAG GGAAGCTATGGGAGGAAGAACAAGATGCGGGAGGGATGGACGAGTTGCTAGCGGTTTTAGGTTACAAGGTCCGGTCGTCGGACATGGCGGAGGTTGCTCA GAAGCTCGAACAGCTAGAGATGGTAATGGGGACGGCGCACGATGATGGGATTTCTTATCTCGGTTGCGACACCGTTCACTACAACCCTTCCGATCTCTCC GGCTGGGTCGACTGTATGCTGTCGGAGCTCCACAACCCGCCTCTCGATCCGGCGGCTGGATCTTCCTCGATATCCTCGAGGGATTTCTCTCAACAGTCCA CGGTATTCAGGGACGATTCAGAGTACGACCTCAGCGCAATCCCTGGCGTTGCCGCTTATCCACAAGCTGAATCGGAGGTGAATATTGACGGCGGCAGAAG AAGAAAGCGGATGAAATCTTCCAGTGGATCTTCAAACACAACAAATTCCTCTAGCTCGAACTCAGCTCCTTCGTCTTCTTCTTCCTCGTCTCCTTCAGTG GCGTTAACAGTCGAATCATCAACTCGTCCAGTTGTGATAGTCGACTCGCAGGAGGCCGGAGTCCGACTTGTCCACACCCTATTAGCCTGCGCCGAAGCGG TTCAGCAAGAAAACGTGAAGCTCGCCGACGCACTCGTCAAGCACACGGGGTTACTGGCGGCTTCTCAATCGGGCGCCATGAGGAAAGTCGCTACCTATTT CGCCGAAGCTCTAGCTCGCCGGATTTACAAGATCTATCCTCAAGACTGTCTAGATCCGTCTTACTCCGACGCCTTGGAGATGCACTTCTATGAGACTTCG CCATACCTGAAATTCGCTCATTTCACAGCGAATCAGGCGATTCTGGAAGCATTCGCGACTTCCAGCCATGTCCACGTCATCGATTTCGGGCTTAAACAAG GTATGCAGTGGCCGGCTCTTATGCAAGCTCTGGCGTGTCGCCCCGGAGGCCCGCCTGCTTTTCGATTGACCGGAATCGGACTTCCACAACCAAAAAACAA CACAGATAATTTACAGCAGGTGGGATGGAAATTGGCGCAGTTTGCCGAGACGATCGGAGTGGAATTTGAATTCCGAGGTTTCGTCGCTAACAGTTTGGCA GATCTGGAGCCGGAGATGCTCGACCTGCGCCCTTCCAATGTTGAGGCGGTGGCTGTCAACTCGGTGTTCGAACTCCATCGCCTCCTGGCCCGACCCGGCG GGATCGACAAAGTTCTGAAATCGATCAAGGCGATGAACCCGAAGATCGTGACGATGGTGGAGCAGGAAGCGAACCACAACGGGGCGGTATTCGTCGACAG GTTTACTGAGGCGTTGCATTACTACTCCACTCTCTTCGACTGTCTGGAAGGGTCATCGACGGCGGCGGAGAACCATGTGATGTCGGAGCTGTATCTCGGG AGGCAGATCTGCAACGTGGTGGCGTGCGAAGGTGGTGACCGAGTTGAGCGGCACGAGACGTTGACTCAGTGGAGGAGTAGAATGGAATCGGCTGGGTTCG ACTCGGTTCACCTGGGATCGAACGCGTACAAGCAGGCGAGTATGTTGCTGGCCTTGTTCGCCGGCGGCGATGGGTACAGAGTGGAGGAGAAGGACGGGTC GTTGATGCTTGGCTGGCATACTAGGCCGCTGATTGCGACGTCTGCGTGGAAACTCGGTTAA
AA sequence Show only first row Show all	>Lus10017626 pacid=23155516 polypeptide=Lus10017626 locus=Lus10017626.g ID=Lus10017626.BGIv1.0 annot-version=v1.0 MKRNHHQSTCSSFGGFNQESASASMAPPPSAGKGKLWEEEQDAGGMDELLAVLGYKVRSSDMAEVAQKLEQLEMVMGTAHDDGISYLGCDTVHYNPSDLS GWVDCMLSELHNPPLDPAAGSSSISSRDFSQQSTVFRDDSEYDLSAIPGVAAYPQAESEVNIDGGRRRKRMKSSSGSSNTTNSSSSNSAPSSSSSSSPSV ALTVESSTRPVVIVDSQEAGVRLVHTLLACAEAVQQENVKLADALVKHTGLLAASQSGAMRKVATYFAEALARRIYKIYPQDCLDPSYSDALEMHFYETS PYLKFAHFTANQAILEAFATSSHVHVIDFGLKQGMQWPALMQALACRPGGPPAFRLTGIGLPQPKNNTDNLQQVGWKLAQFAETIGVEFEFRGFVANSLA DLEPEMLDLRPSNVEAVAVNSVFELHRLLARPGGIDKVLKSIKAMNPKIVTMVEQEANHNGAVFVDRFTEALHYYSTLFDCLEGSSTAAENHVMSELYLG RQICNVVACEGGDRVERHETLTQWRSRMESAGFDSVHLGSNAYKQASMLLALFAGGDGYRVEEKDGSLMLGWHTRPLIATSAWKLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10017626 [exp]	0	1
AT3G10760	GARP		Homeodomain-like superfamily p...		Lus10038996 [exp]	2.4	0.7827
AT1G52343			unknown protein		Lus10007686 [exp]	4.7	0.6999
AT5G05090	GARP		Homeodomain-like superfamily p...		Lus10027291 [exp]	12.0	0.7628
AT1G27320		AHK3	histidine kinase 3 (.1)		Lus10037032 [exp]	12.5	0.7613
AT1G16560			Per1-like family protein (.1.2...		Lus10038885 [exp]	14.8	0.7648
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Lus10036452 [exp]	17.0	0.6829
AT5G02230			Haloacid dehalogenase-like hyd...		Lus10010848 [exp]	19.0	0.7021
					Lus10038438 [exp]	19.8	0.6632
AT1G27320		AHK3	histidine kinase 3 (.1)		Lus10015773 [exp]	20.7	0.7473
AT2G05170		ATVPS11	vacuolar protein sorting 11 (....		Lus10006378 [exp]	20.9	0.7471

Compare expression of checked genes

Lus10017626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.