Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14920 394 / 2e-131 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT1G66350 362 / 3e-119 GRAS RGL1 RGA-like 1 (.1) AT3G03450 350 / 3e-114 GRAS RGL2 RGA-like 2 (.1) AT2G01570 346 / 4e-112 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT5G17490 343 / 7e-112 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G50420 177 / 4e-49 GRAS SCL-3, SCL3 scarecrow-like 3 (.1) AT2G04890 174 / 1e-48 GRAS SCL21 SCARECROW-like 21 (.1) AT5G48150 175 / 2e-48 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT5G41920 172 / 4e-48 GRAS GRAS family transcription factor (.1) AT1G63100 175 / 2e-47 GRAS GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033060 [exp] 451 / 1e-155 AT2G01570 247 / 1e-76 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10033583 [exp] 337 / 1e-108 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10017626 [exp] 335 / 7e-108 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10033061 [exp] 270 / 7e-89 AT1G14920 143 / 2e-41 RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) Lus10041540 [exp] 262 / 5e-79 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 262 / 4e-78 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10009133 [exp] 219 / 9e-69 AT1G14920 286 / 3e-95 RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) Lus10037055 [exp] 208 / 2e-60 AT1G66350 258 / 5e-80 RGA-like 1 (.1) Lus10036932 [exp] 207 / 3e-60 AT1G66350 258 / 1e-79 RGA-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G110700 [exp] 362 / 4e-118 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 360 / 1e-117 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 350 / 2e-113 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 344 / 2e-111 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.001G326000 [exp] 238 / 4e-70 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.015G091200 [exp] 214 / 1e-62 AT1G66350 256 / 4e-79 RGA-like 1 (.1) Potri.012G093900 [exp] 213 / 3e-62 AT1G66350 257 / 2e-79 RGA-like 1 (.1) Potri.003G122400 [exp] 196 / 7e-55 AT1G63100 696 / 0.0 GRAS family transcription factor (.1) Potri.001G109400 [exp] 196 / 1e-54 AT1G63100 711 / 0.0 GRAS family transcription factor (.1) Potri.003G202100 [exp] 191 / 2e-54 AT1G50420 568 / 0.0 scarecrow-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family CL0063 [flax] [poplar] PF12041 [flax] [poplar] DELLA Transcriptional regulator DELLA protein N terminal
Representative CDS sequence Show only first row Show all	>Lus10017758 pacid=23176346 polypeptide=Lus10017758 locus=Lus10017758.g ID=Lus10017758.BGIv1.0 annot-version=v1.0 ATGGTACCCTACGAGACTACCGCCGCCGCCGCTCCTCCTCCCCTGAATCCAATCTCGAACCATCATCCAGCAGTCAGTTCATCATCCTCCTCCGCCATCT CAAAGCCACCGGAGATAGACGGCCTCCTCGCCGGAGCTGGTTACAAGGTCCGTTCCTCTGACCTCCGCCACGTCGCTCACCGTCTCGAGCGTCTCGAAAC AGCGATGCTCAACTCTCCATCACAACAACTCTCCCTCTTAGCATCCGACGCCGTTCTCTACAACCCTTCCGATCTATCCTCCTGGGTCGATACGCTCTTG TCAGAGCTCAACCAGTCTCAGTCCTTCCCTTCTCTACCTTCCGATCTCTCGGATCTCATTTCCAATCCAACGGCTATCGACACTACCTGGATCGACCAAA TTCAGTCCCCATCTCAACAACAACAACCAGCGCAGTTGACGGTGGTGACGGGGGTGGTGGAGGAGGACTCCGGCATACGCCTTGTCCACATGTTAATGAC CTGTGCTGAGTACATCCAACGTGGCGAGCTGGCATTGGCCGGTTCCTTGATCCAGGATATGCAAGGGCTGTTGACCCGAGTCAACACCGGTTGTGGCATC GGGAAAGTCGCCGGGTACTTCATCGACGCACTAACCCGACGGGTATTCGCTGCCCCGGTAACCGCCACCGTGGGTCCGGGCTCCGCTTACGAGACCGAGA TTCTTTACCATCATTTCTACGAGGCCTGTCCGTACCTGAAGTTCGCCCACTTTACAGCTAATCAAGCAATCCTCGAAGCGTTCGACGGCCACGATTGCGT CCACGTGGTTGACTTCAACCTCACGCCAGGCCCACAGCGGCCGGCACTGATACAGGCGCTGGCACTTCGCCCAGGTGGTCCCCCTCTGTTAAGGCTGACA GGAATTGGCCCACCTTCACCTGACGGACGAGACCAGCTCCGTGAAATCGGGCGACACGGCCCCGCCGAGTGGGCCGGAGCCTTAACCGTCCGGTCCGCCT TCCGTGGGGTGGCGGCTTCACGGCTCGAAGACGTCAAGCCGTGGATGCTCCAGGTCAACCCGAAGGAAGCCGTGGCGGTTAACTCAATCATGCAGCTCCA CAAGCTATTAGCATCCGACCCGAGTTCGACAACCCGGAACACCGCCCCGATCGAGATGGTACTGGGTTGGATCCGGAGCCTGAACCCGAAAATCATGACA GTGGTCGAGCAGGAAGCTAACCACAACCAACCGGCGTTTCTAGACCGGTTCACCGAATCACTGTATTACTACTCAACGATGTTCGATTCGCTGGATGCGT GTTCAATCCAGGCGGCGGAGAAGGCGGTAGCAGAGATGTACATACAGAAGGAGATATGCAATGTGGTAAGCTGCGAAGGGTCGGCTCGGCTTGAGCGGCA TGAACCGCTGTCGAAGTGGAGGGAGCGGCTGAACGAGGCCGGGTTCAAGCCGCTACATTTGGGATCCAACGCATTCAAGCAGGCTAGCATGTTGTTGACT CTGTTTTCGGCGGAAGGTTACAGCGTTGAGGAAACCGACGGTTGCTTGACTTTGGGATGGCATAGCCGGCCACTGATCGCGGCCTCAGCTTGGCAGGCGT TACCGGAGATTCCAGTTCCGGATATTGCGGTGGTTAATGAGAGAAACGGCGGAGCGGGTCTGCTGTAA
AA sequence Show only first row Show all	>Lus10017758 pacid=23176346 polypeptide=Lus10017758 locus=Lus10017758.g ID=Lus10017758.BGIv1.0 annot-version=v1.0 MVPYETTAAAAPPPLNPISNHHPAVSSSSSSAISKPPEIDGLLAGAGYKVRSSDLRHVAHRLERLETAMLNSPSQQLSLLASDAVLYNPSDLSSWVDTLL SELNQSQSFPSLPSDLSDLISNPTAIDTTWIDQIQSPSQQQQPAQLTVVTGVVEEDSGIRLVHMLMTCAEYIQRGELALAGSLIQDMQGLLTRVNTGCGI GKVAGYFIDALTRRVFAAPVTATVGPGSAYETEILYHHFYEACPYLKFAHFTANQAILEAFDGHDCVHVVDFNLTPGPQRPALIQALALRPGGPPLLRLT GIGPPSPDGRDQLREIGRHGPAEWAGALTVRSAFRGVAASRLEDVKPWMLQVNPKEAVAVNSIMQLHKLLASDPSSTTRNTAPIEMVLGWIRSLNPKIMT VVEQEANHNQPAFLDRFTESLYYYSTMFDSLDACSIQAAEKAVAEMYIQKEICNVVSCEGSARLERHEPLSKWRERLNEAGFKPLHLGSNAFKQASMLLT LFSAEGYSVEETDGCLTLGWHSRPLIAASAWQALPEIPVPDIAVVNERNGGAGLL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10017758 [exp]	0	1
AT1G10470		IBC7, ATRR1, AR...	maternal effect embryo arrest ...		Lus10030664 [exp]	7.5	0.7269
AT5G58300			Leucine-rich repeat protein ki...		Lus10034446 [exp]	19.5	0.6187
AT4G37250			Leucine-rich repeat protein ki...		Lus10014098 [exp]	38.2	0.6096
AT1G04690		KV-BETA1, KAB1	potassium channel beta subunit...		Lus10011751 [exp]	68.2	0.5960
AT1G78020			Protein of unknown function (D...		Lus10000693 [exp]	70.4	0.5861
AT1G45000			AAA-type ATPase family protein...		Lus10017972 [exp]	101.6	0.5577
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10008522 [exp]	145.2	0.5529
AT4G00870	bHLH	bHLH014	basic helix-loop-helix (bHLH) ...		Lus10030212 [exp]	149.7	0.5507
AT5G46150			LEM3 (ligand-effect modulator ...		Lus10038516 [exp]	220.5	0.5047
AT1G27340			Galactose oxidase/kelch repeat...		Lus10015775 [exp]	266.6	0.4917

Compare expression of checked genes

Lus10017758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.