Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19990 750 / 0 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 741 / 0 RPT6A AAA-type ATPase family protein (.1) AT1G53750 348 / 5e-117 RPT1A regulatory particle triple-A 1A (.1) AT2G20140 333 / 5e-111 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT4G29040 333 / 8e-111 RPT2A regulatory particle AAA-ATPase 2A (.1) AT1G53780 335 / 7e-110 peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (.1.2.3) AT5G43010 321 / 8e-107 RPT4A regulatory particle triple-A ATPase 4A (.1) AT1G45000 320 / 2e-106 AAA-type ATPase family protein (.1.2) AT1G09100 317 / 5e-105 RPT5B 26S proteasome AAA-ATPase subunit RPT5B (.1) AT3G05530 315 / 3e-104 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033055 [exp] 765 / 0 AT5G19990 749 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10031815 [exp] 348 / 6e-117 AT1G53750 828 / 0.0 regulatory particle triple-A 1A (.1) Lus10031243 [exp] 348 / 1e-115 AT1G53750 841 / 0.0 regulatory particle triple-A 1A (.1) Lus10015524 [exp] 334 / 7e-113 AT2G20140 659 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10011901 [exp] 337 / 1e-110 AT2G20140 844 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10006976 [exp] 330 / 1e-109 AT4G29040 828 / 0.0 regulatory particle AAA-ATPase 2A (.1) Lus10019995 [exp] 335 / 2e-106 AT2G20140 827 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10017475 [exp] 314 / 4e-104 AT1G45000 759 / 0.0 AAA-type ATPase family protein (.1.2) Lus10017972 [exp] 314 / 6e-104 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G098300 [exp] 757 / 0 AT5G19990 768 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.008G144100 [exp] 741 / 0 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.001G161700 [exp] 350 / 9e-118 AT1G53750 809 / 0.0 regulatory particle triple-A 1A (.1) Potri.006G216600 [exp] 348 / 4e-117 AT1G53750 804 / 0.0 regulatory particle triple-A 1A (.1) Potri.018G056600 [exp] 345 / 1e-115 AT1G53750 803 / 0.0 regulatory particle triple-A 1A (.1) Potri.014G194700 [exp] 335 / 9e-112 AT4G29040 829 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.002G252600 [exp] 334 / 2e-111 AT4G29040 838 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.005G231700 [exp] 317 / 2e-105 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2) Potri.002G031400 [exp] 315 / 1e-104 AT1G45000 745 / 0.0 AAA-type ATPase family protein (.1.2) Potri.004G158600 [exp] 314 / 3e-104 AT1G45000 752 / 0.0 AAA-type ATPase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10017762 pacid=23176301 polypeptide=Lus10017762 locus=Lus10017762.g ID=Lus10017762.BGIv1.0 annot-version=v1.0 ATGGCTACTGCTGCCGTCGAGATGAAGCAACCGGAGTCTTTAATCGGAGATCAGGCCTTTTCGGCCAAGGGTGTGGCCAAGCAGGGCGAAGGGCTGAAGC AATACTATCAGCAACACATCCACGAGCTCCAGCTCTTGGTCAGGCAGAAGGGTCACAACCTTAATCGCCTTGAAGCTCAGCGGAATGAGCTCAATTCTAG GGTGAGGATGCTTAGAGAAGAGCTGCAGCTGCTCCAGGAACCTGGATCTTATGTTGGTGAGGTTGTCAAGGTTATGGGAAAGAATAAGGTCTTGGTGAAG GTCCATCCAGAGGGAAAGTATGTCGTGGATATTGACAAAAGTATTGACATCACAAAGATCACACCCTCAACAAGGGTGGCCCTTCGTAATGACAGTTATG TTCTTCACCTAGTCTTGCCAAGCAAGGTGGATCCATTGGTCAACCTTATGAAAGTTGAAAAAGTTCCAGATTCTACTTATGATATGATTGGTGGGCTTGA TCAGCAGATTAAAGAAATTAAGGAGGTCATTGAGCTTCCTATTAAACATCCTGAATTGTTTGAGAGCCTTGGAATTGCTCAGCCAAAGGGTGTCCTACTG TATGGCCCTCCCGGAACTGGTAAAACCCTGTTGGCCAGAGCTGTTGCCCACCATACTGACTGCACATTCATTAGGGTCTCTGGTTCTGAATTAGTTCAGA AGTACATTGGAGAAGGTTCTAGAATGGTTAGGGAACTTTTTGTTATGGCAAGGGAGCATGCACCTTCCATCATTTTCATGGATGAGATTGATAGCATTGG GTCTGCTCGAATGGAATCTGGAAGTGGCAATGGTGATAGTGAGGTGCAGAGAACTATGCTGGAGCTACTCAACCAGCTTGATGGATTTGAGGCATCTAAC AAAATCAAGGTCTTGATGGCTACAAATCGTATTGATATCCTTGACCAAGCTTTGCTTCGGCCAGGACGAATTGACAGGAAAATCGAGTTCCCTAATCCTA ATGCAGAGTCTCGCTGGGATATCTTGAAAATCCATTCAAGAAGAATGAATTTGATGCGTGGGATTGACTTGAAGAAAATTGCAGAAAAGATGAACGGAGC ATCTGGTGCGGAGCTCAAGGCTGTATGCACAGAGGCAGGAATGTTTGCACTGAGGGAGAGGAGGGTGCATGTGACGCAAGAAGATTTTGAGATGGCAGTG GCTAAGGTGATGAAGAAGGACACGGAGAAGAACATGTCGCTGAGGAAGCTATGGAAGTAA
AA sequence Show only first row Show all	>Lus10017762 pacid=23176301 polypeptide=Lus10017762 locus=Lus10017762.g ID=Lus10017762.BGIv1.0 annot-version=v1.0 MATAAVEMKQPESLIGDQAFSAKGVAKQGEGLKQYYQQHIHELQLLVRQKGHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVK VHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLL YGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASN KIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNAESRWDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAV AKVMKKDTEKNMSLRKLWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19990		ATSUG1, RPT6A	regulatory particle triple-A A...		Lus10017762 [exp]	0	1
AT1G67890			PAS domain-containing protein ...		Lus10016912 [exp]	1.7	0.9027
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10041055 [exp]	9.5	0.9041
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10033058 [exp]	12.8	0.8874
AT1G68760		ATNUDX1, ATNUDT...	NUDIX HYDROLASE 1, ARABIDOPSIS...		Lus10033325 [exp]	14.1	0.8889
AT1G73660			protein tyrosine kinase family...		Lus10031341 [exp]	15.0	0.8700
AT5G09300			Thiamin diphosphate-binding fo...		Lus10020895 [exp]	17.3	0.8974
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10021478 [exp]	17.6	0.8987
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10007007 [exp]	19.8	0.9032
					Lus10041915 [exp]	21.7	0.8948
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Lus10027922 [exp]	23.4	0.8899

Compare expression of checked genes

Lus10017762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.