Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63030 167 / 2e-53 AP2_ERF DDF2�ADREB1E DWARF AND DELAYED FLOWERING 2, Integrase-type DNA-binding superfamily protein (.1.2) AT1G12610 167 / 5e-53 AP2_ERF DDF1, DREB1F, FTL1 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) AT5G51990 157 / 1e-48 AP2_ERF CBF4, DREB1D DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) AT4G25470 152 / 9e-47 AP2_ERF DREB1C, FTQ4, CBF2, ATCBF2 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) AT4G25480 150 / 4e-46 AP2_ERF CBF3, DREB1A, ATCBF3 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) AT4G25490 141 / 1e-42 AP2_ERF DREB1B, CBF1, ATCBF1 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) AT5G25810 112 / 4e-31 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT5G11590 111 / 8e-31 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1) AT2G44940 107 / 2e-28 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G32800 102 / 3e-27 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029602 [exp] 185 / 2e-60 AT1G12610 181 / 2e-58 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10029601 [exp] 186 / 6e-60 AT1G12610 191 / 3e-61 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10001871 [exp] 184 / 5e-59 AT1G12610 193 / 4e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10006332 [exp] 183 / 6e-59 AT1G12610 194 / 1e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10006334 [exp] 183 / 1e-58 AT1G12610 193 / 3e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10024491 [exp] 167 / 2e-52 AT4G25480 187 / 6e-60 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) Lus10027412 [exp] 159 / 3e-49 AT5G51990 239 / 3e-80 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Lus10027414 [exp] 155 / 2e-48 AT4G25490 208 / 1e-68 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Lus10031657 [exp] 155 / 8e-48 AT5G51990 235 / 2e-78 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G110700 [exp] 186 / 5e-60 AT5G51990 201 / 8e-65 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.001G110800 [exp] 174 / 4e-55 AT4G25470 164 / 4e-50 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) Potri.012G134100 [exp] 171 / 6e-54 AT5G51990 197 / 4e-63 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.015G136400 [exp] 161 / 4e-50 AT5G51990 189 / 2e-60 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.009G147700 [exp] 139 / 1e-40 AT4G25480 108 / 3e-28 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) Potri.004G187001 [exp] 125 / 2e-35 AT4G25490 124 / 1e-34 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Potri.018G043900 [exp] 113 / 3e-31 AT5G11590 212 / 5e-69 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.014G055700 [exp] 105 / 4e-28 AT2G44940 206 / 2e-65 Integrase-type DNA-binding superfamily protein (.1) Potri.003G050700 [exp] 103 / 8e-28 AT5G11590 166 / 5e-51 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.001G187500 [exp] 103 / 1e-27 AT5G25810 157 / 9e-48 TINY, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10017829 pacid=23148799 polypeptide=Lus10017829 locus=Lus10017829.g ID=Lus10017829.BGIv1.0 annot-version=v1.0 ATGGCAGAGCCTCTTAAGGTGGCGGCGGACTATCCGAAGAAGCGGGCGGGTCGGAGGGTGTTCAAGGAGACCCGTCACCCGGTTTACAGAGGAGTACGGA GGAGGAACAACGACAAGTGGGTGTGTGAGCTGCGGGACCCGCACAGCAAGTCAAGGAGGATTTGGCTGGGCACTTACCCGACTCCTGAAATGGCTGCCCG TGCTCATGACGTGGCAGCCCTGTCTTTCCGTGGGAATGCGGCCTGCCTTAACTTCGCTGACTCCGCTTGGAGGCTGCCCCTTCCGGCTTCCTCCGAGGCA GAGGATATTCGGAAAGCTGCTGCTCTGGCGGCAGAGATGTTCCGCCACAAGGATAATACGGACAAGGAATTTGATTGGGATGAAGAAGCGAGTTTTGAAC TGCCAGGACTGATCGCCGGATTGGCAGAAGGACTTTTGATCCCTCCGCCGGTGGGTTATGCAGAAGAAGCCGATTGCTGTTTTGATCAATCGGTTTTGTG GAGTCATGATTCCATTTGA
AA sequence Show only first row Show all	>Lus10017829 pacid=23148799 polypeptide=Lus10017829 locus=Lus10017829.g ID=Lus10017829.BGIv1.0 annot-version=v1.0 MAEPLKVAADYPKKRAGRRVFKETRHPVYRGVRRRNNDKWVCELRDPHSKSRRIWLGTYPTPEMAARAHDVAALSFRGNAACLNFADSAWRLPLPASSEA EDIRKAAALAAEMFRHKDNTDKEFDWDEEASFELPGLIAGLAEGLLIPPPVGYAEEADCCFDQSVLWSHDSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63030	AP2_ERF	DDF2�ADREB1E	DWARF AND DELAYED FLOWERING 2,...		Lus10017829 [exp]	0	1
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10033391 [exp]	9.3	0.7548
AT5G49350			Glycine-rich protein family (....		Lus10037727 [exp]	28.0	0.7058
AT5G49360		ATBXL1, BXL1	beta-xylosidase 1 (.1)		Lus10037728 [exp]	31.0	0.6985
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028857 [exp]	61.7	0.7113
AT3G49700		AtACS9, ACS9, E...	ETHYLENE OVERPRODUCING 3, 1-am...		Lus10007714 [exp]	64.4	0.6860
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10027062 [exp]	76.5	0.6982
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10020252 [exp]	117.3	0.6332
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10026061 [exp]	171.3	0.6568

Compare expression of checked genes

Lus10017829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.