Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12630 94 / 1e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G52020 94 / 2e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G36450 82 / 2e-19 AP2_ERF HRD HARDY, Integrase-type DNA-binding superfamily protein (.1) AT4G25490 70 / 2e-14 AP2_ERF DREB1B, CBF1, ATCBF1 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) AT4G25480 70 / 2e-14 AP2_ERF CBF3, DREB1A, ATCBF3 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) AT4G25470 66 / 6e-13 AP2_ERF DREB1C, FTQ4, CBF2, ATCBF2 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) AT5G51990 66 / 6e-13 AP2_ERF CBF4, DREB1D DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) AT2G44940 65 / 3e-12 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G25810 63 / 6e-12 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT5G11590 63 / 1e-11 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024492 [exp] 268 / 2e-91 AT5G52020 140 / 3e-41 Integrase-type DNA-binding superfamily protein (.1) Lus10031652 [exp] 100 / 3e-26 AT5G52020 150 / 5e-46 Integrase-type DNA-binding superfamily protein (.1) Lus10031655 [exp] 97 / 8e-25 AT5G52020 143 / 7e-43 Integrase-type DNA-binding superfamily protein (.1) Lus10027413 [exp] 97 / 1e-24 AT1G12630 146 / 3e-44 Integrase-type DNA-binding superfamily protein (.1) Lus10014376 [exp] 89 / 2e-21 AT2G36450 167 / 2e-52 HARDY, Integrase-type DNA-binding superfamily protein (.1) Lus10031656 [exp] 81 / 1e-18 AT5G52020 148 / 5e-45 Integrase-type DNA-binding superfamily protein (.1) Lus10027412 [exp] 69 / 6e-14 AT5G51990 239 / 3e-80 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Lus10031654 [exp] 68 / 6e-14 AT4G25490 201 / 9e-66 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Lus10035566 [exp] 68 / 8e-14 AT4G25470 143 / 7e-43 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G110500 [exp] 118 / 4e-33 AT5G52020 152 / 1e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.003G121200 [exp] 117 / 1e-32 AT5G52020 149 / 2e-45 Integrase-type DNA-binding superfamily protein (.1) Potri.016G018600 [exp] 94 / 1e-23 AT2G36450 135 / 7e-40 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.006G021000 [exp] 92 / 7e-23 AT2G36450 122 / 5e-35 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.012G134000 [exp] 90 / 2e-21 AT5G52020 123 / 5e-34 Integrase-type DNA-binding superfamily protein (.1) Potri.015G136300 [exp] 87 / 9e-21 AT5G52020 132 / 7e-38 Integrase-type DNA-binding superfamily protein (.1) Potri.001G110800 [exp] 80 / 8e-18 AT4G25470 164 / 4e-50 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) Potri.012G134100 [exp] 73 / 3e-15 AT5G51990 197 / 4e-63 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.001G110700 [exp] 71 / 1e-14 AT5G51990 201 / 8e-65 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.015G136400 [exp] 69 / 5e-14 AT5G51990 189 / 2e-60 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10017830 pacid=23148827 polypeptide=Lus10017830 locus=Lus10017830.g ID=Lus10017830.BGIv1.0 annot-version=v1.0 ATGGCCGACCCATATAATAACTATTATAATTATTCCTACCCAGCACCCCATCCTAATAATAATAACGCTCCCACTAATTCCACTTCTCCTCCTTCTTCTT CCTCAAAGCACCCCAACTACCGCGGAATCCGCTACCGTGGCGGTAAATGGGTCTCTGAAATCCGGGAGCCCCGCAAAACCAACCGTATTTGGCTCGGTAC TTTTCCCGCGGCGGAGATTGCCGCCGCGGGCTACGACGCGGCTGCTCTGGGGCTCAAGGGGGCTAATGCGCTCAAGGGCGATGAAGCCGTCCTTAACTTC CCCGAAGCGGCCGGTTCCTACCCTATTCCTGCCTCCTCCTCTGCTGCCGATATCCGCAATGCTGCCGCAGCTGCGGCCGCAATCAAGAAGGATGAGATCA TGCGGGCTACTTGGTCGTCCACGTCCATTAATGATCATAATCACGAGCAGGGGCTAACTAGTAACTTTAATGAGTTTGGATCAGGCGCCACCGCGAATTA CTCAGGAGATGATCAGTTTGTGGACGAGGAGGCGCTGTTTGATATGCCAAATCTGCTGGTGAATATGGCTCAAGGGATGATGGTTTCTCCGCCGCGATTT CCGACGTACGATGATGGCTGTTACTATTCCCAGGAAGATGATCACACTAGGAATGGAGATAGTCTTTGGAGCGGCTATTATTGA
AA sequence Show only first row Show all	>Lus10017830 pacid=23148827 polypeptide=Lus10017830 locus=Lus10017830.g ID=Lus10017830.BGIv1.0 annot-version=v1.0 MADPYNNYYNYSYPAPHPNNNNAPTNSTSPPSSSSKHPNYRGIRYRGGKWVSEIREPRKTNRIWLGTFPAAEIAAAGYDAAALGLKGANALKGDEAVLNF PEAAGSYPIPASSSAADIRNAAAAAAAIKKDEIMRATWSSTSINDHNHEQGLTSNFNEFGSGATANYSGDDQFVDEEALFDMPNLLVNMAQGMMVSPPRF PTYDDGCYYSQEDDHTRNGDSLWSGYY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10017830 [exp]	0	1
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10013069 [exp]	1.0	0.8769
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10029081 [exp]	5.8	0.7700
					Lus10031697 [exp]	8.8	0.7600
AT4G28980		CAK1AT, CDKF;1	CYCLIN-DEPENDENT KINASE F;1, C...		Lus10034931 [exp]	12.0	0.7367
AT1G71930	NAC	VND7, ANAC030	Arabidopsis NAC domain contain...		Lus10017915 [exp]	12.4	0.6527
AT5G24010			Protein kinase superfamily pro...		Lus10027509 [exp]	13.0	0.7078
AT2G46520			cellular apoptosis susceptibil...		Lus10030434 [exp]	16.2	0.6643
					Lus10002746 [exp]	18.5	0.6949
AT5G22280			unknown protein		Lus10034182 [exp]	19.6	0.6866
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10030567 [exp]	19.7	0.6710

Compare expression of checked genes

Lus10017830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.