Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24590 64 / 1e-11 AP2_ERF ESR2, DRNL, SOB2, DRN-LIKE FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) AT5G13910 60 / 1e-10 AP2_ERF LEAFY PETIOLE (LEP) LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) AT1G12980 60 / 3e-10 AP2_ERF DRN, ESR1 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1) AT5G18560 57 / 3e-09 AP2_ERF PUCHI Integrase-type DNA-binding superfamily protein (.1) AT1G28160 55 / 9e-09 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G20310 50 / 4e-07 AP2_ERF ATERF7, ATERF-7 ethylene response factor 7 (.1) AT1G12890 49 / 1e-06 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G15210 48 / 2e-06 AP2_ERF ATERF4, RAP2.5, ATERF-4 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) AT1G28360 47 / 2e-06 AP2_ERF AtERF12 ERF domain protein 12 (.1) AT1G50640 47 / 3e-06 AP2_ERF ATERF3 ethylene responsive element binding factor 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035076 [exp] 142 / 1e-40 AT1G24590 143 / 2e-40 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Lus10035129 [exp] 59 / 5e-10 AT5G13910 152 / 7e-46 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Lus10033963 [exp] 56 / 1e-08 AT5G18560 186 / 4e-56 Integrase-type DNA-binding superfamily protein (.1) Lus10039857 [exp] 47 / 4e-06 AT5G44210 138 / 8e-41 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10005343 [exp] 46 / 4e-06 AT5G25190 174 / 3e-56 ethylene and salt inducible 3, Integrase-type DNA-binding superfamily protein (.1) Lus10033664 [exp] 47 / 5e-06 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10041023 [exp] 44 / 4e-05 AT5G25190 205 / 7e-68 ethylene and salt inducible 3, Integrase-type DNA-binding superfamily protein (.1) Lus10015415 [exp] 44 / 7e-05 AT5G44210 134 / 8e-39 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10016815 [exp] 43 / 9e-05 AT5G25190 206 / 1e-68 ethylene and salt inducible 3, Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G046600 [exp] 64 / 3e-11 AT1G24590 71 / 2e-13 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Potri.008G186300 [exp] 61 / 1e-10 AT1G24590 69 / 1e-12 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Potri.003G161000 [exp] 60 / 3e-10 AT1G28160 128 / 1e-35 Integrase-type DNA-binding superfamily protein (.1) Potri.001G069300 [exp] 59 / 4e-10 AT1G28160 121 / 7e-33 Integrase-type DNA-binding superfamily protein (.1) Potri.001G157100 [exp] 59 / 5e-10 AT5G13910 101 / 6e-26 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Potri.003G077700 [exp] 59 / 7e-10 AT5G13910 118 / 3e-32 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Potri.008G215600 [exp] 53 / 5e-08 AT5G18560 176 / 4e-52 Integrase-type DNA-binding superfamily protein (.1) Potri.002G043300 [exp] 52 / 6e-08 AT5G44210 88 / 8e-22 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.005G219600 [exp] 50 / 2e-07 AT1G50640 85 / 2e-20 ethylene responsive element binding factor 3 (.1) Potri.004G047600 [exp] 50 / 5e-07 AT5G44210 99 / 2e-25 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10017907 pacid=23148812 polypeptide=Lus10017907 locus=Lus10017907.g ID=Lus10017907.BGIv1.0 annot-version=v1.0 ATGGAAGAAGCTTCCACGACACTAAACGGAATGACCACCACCTCATCACTACCGGAATATCCTTACTTACTATACCCCACTCCCACTGACCCACTTCACC ACCGCCACATCAGCAGCTCCTCCACCACCAAGAGGACACCACCACCACCGGCGGCGGCGACCATTGCGGCTGCCAACGGGGTCACGGCAAGGTACCGGGG AGTGCGGAGGAGGCCTTGGGGAAGGTACGCTGCGGAGATAAGGGACCCAGTTTCCAAGGAGAGGCGGTGGCTGGGAACTTTCGACACCGCGGAAGATGCC GCACTTGCTTACGACTTCGCGGCACGTAACATGCTTGGGTTTAAGGCTCGCACCAACTTCGTTTACCCTTCAGACGTACCACCTTTGCCGCCGGTTGACC CTCATTGTTTCTGCAGCCATCATCATCATCATCGTTTCCCCCCTTTCACTCATTTCAACAAACACCTTGCCTGCACTACTTCTTCCCCCGTTATTAACAA CCATCACCACCACCACACCACCGCTTCGACCTTTCATCAACATCAACATCATCATCCCATTCTCGCCGCTCCACCGCCTCCGCAGCTTCGAAAAAACGAC TTTTTCAACTCCTCCTTATCCTCCACCGCCGTTAGCCCGCCGCCGTCAACCCTTGTGGGTTCTGCTGTACCGGCGCCGTCTGAGGATAAGTACTGCATGG AGTTTTTTCCTCAGGAGGCATCTGGGTCTGGTTTGCTTGAGGAAGTGATCCAGGGGTTTTTCCCCAAGCCGCCGCCGGAGAAAGAGTTGTCAGTGATGAG GAACGAATGTGGGGAGTAG
AA sequence Show only first row Show all	>Lus10017907 pacid=23148812 polypeptide=Lus10017907 locus=Lus10017907.g ID=Lus10017907.BGIv1.0 annot-version=v1.0 MEEASTTLNGMTTTSSLPEYPYLLYPTPTDPLHHRHISSSSTTKRTPPPPAAATIAAANGVTARYRGVRRRPWGRYAAEIRDPVSKERRWLGTFDTAEDA ALAYDFAARNMLGFKARTNFVYPSDVPPLPPVDPHCFCSHHHHHRFPPFTHFNKHLACTTSSPVINNHHHHHTTASTFHQHQHHHPILAAPPPPQLRKND FFNSSLSSTAVSPPPSTLVGSAVPAPSEDKYCMEFFPQEASGSGLLEEVIQGFFPKPPPEKELSVMRNECGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24590	AP2_ERF	ESR2, DRNL, SOB...	FOR SUPPRESSOR OF PHYTOCHROMEB...		Lus10017907 [exp]	0	1
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10002511 [exp]	1.0	0.8966
AT5G28237			Pyridoxal-5'-phosphate-depende...		Lus10008278 [exp]	1.4	0.8399
					Lus10035468 [exp]	6.0	0.7592
AT4G30030			Eukaryotic aspartyl protease f...		Lus10007053 [exp]	18.3	0.7492
AT2G26975			Ctr copper transporter family ...		Lus10023045 [exp]	19.6	0.7458
					Lus10014101 [exp]	19.9	0.7900
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10001292 [exp]	20.4	0.6909
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10029821 [exp]	21.3	0.8016
AT4G28050		TET7	tetraspanin7 (.1)		Lus10038964 [exp]	24.4	0.7952
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029576 [exp]	25.3	0.7527

Compare expression of checked genes

Lus10017907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.