Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66350 241 / 3e-73 GRAS RGL1 RGA-like 1 (.1) AT3G03450 235 / 2e-70 GRAS RGL2 RGA-like 2 (.1) AT5G17490 234 / 3e-70 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G14920 233 / 5e-70 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT2G01570 227 / 3e-67 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT5G48150 218 / 2e-64 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 203 / 6e-60 GRAS SCL21 SCARECROW-like 21 (.1) AT1G21450 205 / 6e-59 GRAS SCL1 SCARECROW-like 1 (.1) AT5G41920 198 / 6e-58 GRAS GRAS family transcription factor (.1) AT2G29065 199 / 2e-56 GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014786 [exp] 821 / 0 AT2G01570 186 / 7e-53 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10037055 [exp] 566 / 0 AT1G66350 258 / 5e-80 RGA-like 1 (.1) Lus10036932 [exp] 565 / 0 AT1G66350 258 / 1e-79 RGA-like 1 (.1) Lus10031172 [exp] 296 / 5e-93 AT3G03450 257 / 5e-78 RGA-like 2 (.1) Lus10031748 [exp] 293 / 1e-91 AT3G03450 248 / 2e-74 RGA-like 2 (.1) Lus10041540 [exp] 288 / 6e-89 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 287 / 8e-88 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10022418 [exp] 230 / 1e-69 AT1G50420 592 / 0.0 scarecrow-like 3 (.1) Lus10017626 [exp] 231 / 3e-68 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G091200 [exp] 691 / 0 AT1G66350 256 / 4e-79 RGA-like 1 (.1) Potri.012G093900 [exp] 677 / 0 AT1G66350 257 / 2e-79 RGA-like 1 (.1) Potri.005G095100 [exp] 309 / 8e-99 AT1G66350 252 / 3e-77 RGA-like 1 (.1) Potri.001G326000 [exp] 270 / 2e-82 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.017G125200 [exp] 240 / 1e-71 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 238 / 7e-71 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 235 / 7e-70 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 233 / 4e-69 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.001G361700 [exp] 223 / 7e-66 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.014G164400 [exp] 211 / 2e-61 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10017930 pacid=23145661 polypeptide=Lus10017930 locus=Lus10017930.g ID=Lus10017930.BGIv1.0 annot-version=v1.0 ATGGGTCCTGGTCTACTCTGCAATTACTCCGATGAGAGTCATGATAGGGTGAAGGGTCCTGATATGAGTCTTAAAGAAATGGCTTTCTACCCTTACCCGT ATCTCCCCATCCTGGAGAACAGTTATGCCTCAGAATTCCTCATTCCTATACTAGATCATGATGATGCTGATGCTGCTGTTGATGATTCCAGAAGGCACAA GCGAATAAAGCGAAACAACAGCGTCCCTGCATCGATTGGAAGCAACATCGACAAAAGCGGAGGAAGCATGATGATGATGATGAACAGGAGCTTGAGCATT GGGAGCATGATGAACACATTGCCTAGACTTCATTTCAGGGATCATATCTGGACCTACACTCAGAGGTTTCGAGCTGCCGAGGCCATCGAAGAAGCTGTGA AATCGATGGACATTAATAACGGCGAAGAAGATGGGGATAGTAGTGATGGGATGAGGCTAGTTCAGCTATTGATTGCTTGCGCTGAGGCCGTGGCTTGTCG CGACAAGCCACACGCCTCGGCTCTGTTGACTGAGCTTCGAACGAAAGCTCTAGTCTTGGGCTCCTCTTTCCAGAGAGTAGCCTCGTGCTTTGTCCAAGGG CTGTCCGAGAGGCTCTCTCTTGTTCAGCCCTTGGGAGCTGTCGGGTTCGTTGCCCCCATCATTATGGACAGAGCAGTTTCTGATGAGAAAGAAGAAGCAT TGAGCCTTGTTTATGAGAATTGTCCACATATCCAATTTGGCCACTTTGTGGCCAACTCTTCCATTATGGAAGCCCTTGAGGGAGAGAGTTTTGTCCATGT TGTCGACCTAGGGATGACCCTAGGTCTAGCTCATGGACACCAATGGCGAGGCTTGATCGAAAGCCTCGCCAATGATCGGGCTGGAGAGCACCATCCCGTA AGGCTGCGTGTCACTGGTGTTGGCACATCAGTTAAGAGATTCAGTGTGATAGGCAAGGAGCTGAAAGAGTATGCAAAAGAGTATGGGAATATAGAGATGG AGTTCTCAGTAGTGGAGAGCAATTTGGAGAATCTGAAACCTCAAGACATCAAAACACATGAAGGTGAAGTCCTGGTGGTGAACAGCATTCTCCAGCTGCA TTGCGTGGTGAAAGAAAGCAGGGGAGCGTTGAACTCCGTGCTGCAGATGATTAACAACCTGTCACCTAAGGTCATGGTCCTGATGGAGCAGGATTCGAGT CACAACGGGCCTTTCTTTCTGGGAAGGTTCATGGAGGCGCTGCATTACTATGCTGCCATCTTCGACGCGATGGACGCAATGCTACCCAAGTACGACACGA GGCGTGCGAAGATGGAGCAGTTCTACTTTGGGGAGGAGATAAAGAACATCGTGAGCTGCGAAGGTGGCGGGAGGGTTGAGAGGCACGAGAAGCTGGACCA GTGGAGGAGGAGGATGAGTAGAGCTGGTTTCCAGGGTTCACCAGTGAAGATGCTGGGAAAGGCTAAGCAGTGGCTGGTGAGCAAGAAGGTGACTCAAGGG TATACTGTGGTGGAAGAGAAAGGTTGTTTGGTGCTTGGGTGGAAATCCAGGCCTATGGTTTCTGTTTCTTGCTGGAAATCTTCAAGTTGA
AA sequence Show only first row Show all	>Lus10017930 pacid=23145661 polypeptide=Lus10017930 locus=Lus10017930.g ID=Lus10017930.BGIv1.0 annot-version=v1.0 MGPGLLCNYSDESHDRVKGPDMSLKEMAFYPYPYLPILENSYASEFLIPILDHDDADAAVDDSRRHKRIKRNNSVPASIGSNIDKSGGSMMMMMNRSLSI GSMMNTLPRLHFRDHIWTYTQRFRAAEAIEEAVKSMDINNGEEDGDSSDGMRLVQLLIACAEAVACRDKPHASALLTELRTKALVLGSSFQRVASCFVQG LSERLSLVQPLGAVGFVAPIIMDRAVSDEKEEALSLVYENCPHIQFGHFVANSSIMEALEGESFVHVVDLGMTLGLAHGHQWRGLIESLANDRAGEHHPV RLRVTGVGTSVKRFSVIGKELKEYAKEYGNIEMEFSVVESNLENLKPQDIKTHEGEVLVVNSILQLHCVVKESRGALNSVLQMINNLSPKVMVLMEQDSS HNGPFFLGRFMEALHYYAAIFDAMDAMLPKYDTRRAKMEQFYFGEEIKNIVSCEGGGRVERHEKLDQWRRRMSRAGFQGSPVKMLGKAKQWLVSKKVTQG YTVVEEKGCLVLGWKSRPMVSVSCWKSSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10017930 [exp]	0	1
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10023621 [exp]	11.3	0.7374
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10009928 [exp]	13.4	0.7436
AT4G35200			Arabidopsis protein of unknown...		Lus10022635 [exp]	22.4	0.8109
AT3G62100	AUX_IAA	IAA30	indole-3-acetic acid inducible...		Lus10038025 [exp]	23.6	0.8061
AT3G09280			unknown protein		Lus10017211 [exp]	24.5	0.7970
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10034208 [exp]	75.1	0.7714
AT4G34810			SAUR-like auxin-responsive pro...		Lus10042377 [exp]	80.4	0.7048
AT1G75717			unknown protein		Lus10034523 [exp]	150.6	0.7220

Compare expression of checked genes

Lus10017930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.