Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15120 1276 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G05910 263 / 2e-71 cell division cycle protein 48-related / CDC48-related (.1) AT3G09840 179 / 1e-45 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT5G03340 179 / 1e-45 ATPase, AAA-type, CDC48 protein (.1) AT3G53230 177 / 3e-45 ATPase, AAA-type, CDC48 protein (.1) AT3G56690 167 / 1e-41 CIP111 Cam interacting protein 111 (.1) AT4G29040 157 / 2e-40 RPT2A regulatory particle AAA-ATPase 2A (.1) AT2G20140 156 / 2e-40 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT5G43010 153 / 1e-39 RPT4A regulatory particle triple-A ATPase 4A (.1) AT1G45000 152 / 2e-39 AAA-type ATPase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013677 [exp] 3038 / 0 AT3G15120 1474 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027038 [exp] 266 / 5e-72 AT1G05910 1546 / 0.0 cell division cycle protein 48-related / CDC48-related (.1) Lus10025576 [exp] 265 / 5e-72 AT1G05910 1557 / 0.0 cell division cycle protein 48-related / CDC48-related (.1) Lus10037385 [exp] 178 / 2e-45 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021442 [exp] 177 / 4e-45 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 177 / 5e-45 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 177 / 5e-45 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021441 [exp] 177 / 5e-45 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10015524 [exp] 155 / 4e-41 AT2G20140 659 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G141400 [exp] 1481 / 0 AT3G15120 1478 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G127900 [exp] 265 / 4e-72 AT1G05910 1351 / 0.0 cell division cycle protein 48-related / CDC48-related (.1) Potri.017G030900 [exp] 265 / 6e-72 AT1G05910 1494 / 0.0 cell division cycle protein 48-related / CDC48-related (.1) Potri.016G091600 [exp] 179 / 7e-46 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.015G080600 [exp] 179 / 1e-45 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.012G088200 [exp] 178 / 2e-45 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G125500 [exp] 178 / 2e-45 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.017G108200 [exp] 174 / 4e-44 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.002G252600 [exp] 157 / 1e-40 AT4G29040 838 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.014G194700 [exp] 157 / 1e-40 AT4G29040 829 / 0.0 regulatory particle AAA-ATPase 2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10017935 pacid=23147958 polypeptide=Lus10017935 locus=Lus10017935.g ID=Lus10017935.BGIv1.0 annot-version=v1.0 ATGCAATTGAAATCGTCGGCTTCTGGTTCCGTTGCCGCTGCTTCTCCGTCTAGGCTGAGTGATTTCAGCTCACCAGCGGGTTCTAGGGTAAGACCAAAGC GCAAGAAACTTGATTTGATCTGCGAAAGCGTTTACAATCAGAACCACACCGAGCCCAATGCAGGGGTTGGGACGGCAGCATCGGACCTTCGTCGTAGCTC GAGGGTTCGGCGTCGGCCAGTTGTGCTTGATGTATCACCTCCACCGGTGAAGAAGAGGAATAAATTGGGCAAGGGCGTGAAATCTAGTGCTAAGAAGGAT GTTTCTGGTGGTTCATCAAGGGGTAGGAAGAAGGATGAGGAGGAGGGGGAGGAGGAGACGAACTTGGATGGATTGGACACTCCAGGGAGCTGGAAATCAC GTTTAAGGGCTATGAAAAGGAATGCAAGAGGCGGGAAGAGAAAGCTGTTTGCTGAGACGGTGTTAGAGGAGCGAGTTCCGTCTAAGAAAGTGGAGTCTGA TGAAGAGGAACCGGTGGCTGCAAAGACAAAGAGGTCGGCGAGACTTAAGGCTATAAGGGGTTTAATGGAGGAGCTGAAAGAAGTTGATCCGGTTTCTTCT GACGATGCAGATGTCGAAAAGAGTGCCGATTCTGACATTGAAGATAGCGGGAAGGATCAAAGGGAGGTGACTAATGATGACGATGATGATGATGAGTCAT CATCCTCGGAAAGGGAAACAAGTGGCACAGATGAGGAGAACGACGATGTTGATGTTGATGTTGATCCTCTTTCTGAACATGTGGAGATGTGCGAGGAGGA GGAGAAGTGTGGATCAGATAGTTTGAAGTCAGAGAAAAGGATTGATGGAGCTGGTACATTGGATAATGAGGAGACGAATGATGTTGAGGAGATAGGATTA GAAAATGAGAGTGGAAATGGAGGGGAAACTGCAAGGGAAGCTGGTTCTTTGGATAATGAGGAGACGAATGATGCTGAGGAGAGAGGATTAGAAAATGAGA GTGGAAATGAAGGGGAAACTGCAAGGGAAAATGTAGACTCAGACGCAAGGGCAAGCGAAAGGAGCGATGATGGAGGAAATGATATGGACAGAGTTGATAA GTTGGATGGAGTGGATGACAGAGAAGCCGCTGCGGCCACAGTTGAAGAGATGCCTACGGCTGAGAAGCATTTGACAGAAGAGAGAAAGATGGAGGGTGAT TCTGTCGATATTAGTGGTTCACCAAGGGTTAAACAGGGGAGACGATGTGGGTTGTGTGGCTGTGGTACTGATGGTAAGCCACCGAAGAGATCGGTTCAAG ATGGAGGTGAGAGCGAGGCTTATTGTGGCTCATCGGCTTCAGAGGAGTGCAACTATGATGTATGGGATGGATTCGGGGACGAACCAGGGTGGTTGGGTCG TCTCTTGGGTCCGATAAATGACCGTTATGGTATTGCTGGAATCTGGGTTCATCAACTCTGTGCTGTATGGAGTCCGGAGGTTTATTTTGCTGGTTTGGGT TGCCTAAAAAATATAAGAGCAGCACTCTGCAGAGGAAAAGCACTAAAATGCACCCGCTGTGGAAGGCGAGGAGCAACAACTGGCTGTCGTGTTGATCGCT GCCCAAGAACCTACCACTTGCCTTGTGCACGAGTTAGTGGCTGTATCTTTGATCATAGAAAATTTCTTATCGCATGCACTGATCACCGACATATTTTTCA ACCTCATGATAGTCAATTGCTAACGAGGATAAAAAAGTTGAGAGCAAAAAAAATGAAATTAGAGATCAGAAAGTTGTCCAATGATGCATGGAGAAAGGAT GTTGAAGCTGAAGAAAAGTGGTTAGAGAACTGTGGTGAAGATGAAGAGTTTCTGAAAAGTGTCTTCAGTAATCTAGGGATTACTCCCCCTAGGGGGGTTC TTTTGCATGGCTATCCTGGAACTGGTAAAACTCTTGTAGTGCGTGCACTTATTGGTGCATGTGCTCAAGGAGATAAAAAGATTGCTTATTTTGCACGAAA AGGTGCCGACTGCTTGGGGAAATATGTTGGTGATGCTGAGCGACAATTGAGACTCTTGTTTCAGGTTGCCGAGAAATGTCAGCCTTCTATAATTTTTTTC GACGAGATCGATGGTTTGGCACCCTGTCGTACAAGGCAGCAAGATCAGACTCACAGTTCAGTTGTCTCCACATTGCTTGCTCTCATGGATGGCTTAAAAT CAAGAGGCTCAGTGGTCGTGATAGGTGCAACAAATCGTCCTGAAGCTGTTGATCCAGCCTTACGTAGACCAGGGAGATTTGATAGGGAAATTTATTTTCC CCTGCCATCTGTCGAGGATAGGGCTGCCATTCTGGCTCTCCACACACGAAGATGGCCCAAACCTGTATCCGGAGCCTTACTAAAGTGGATTGCTCATGAA ACTGTAGGGTTTGCTGGCGCTGATCTGCAGGCTCTCTGTACGCAAGCTGTCATCATCTCTTTGAAAAGGAACTTCCCTCTGCACGAAGTTCTGTCAGCTG CTACAAAGAAAGCTCCTGATGCTAAACGCCTTCCACTTCCATCATTTACAGTGGAGGAGAGGGACTGGTTGGAGGCTTTATCATATGCTCCACCTCCATG CTCTCGTAGAGAAGCAGGAATGGCTTCTTATGATTTAGTATCCTCTGCTCTCCCCACTCATCTTATTCCGTGTCTGCTGTATCCATTAACAGTTCTGCTT ATGTCTCTCTATTTAGACGAGCGCCTCTGGCTTCCACCTCTTCTTTCTAAAGCTGGAGCGATGATCGAATCTTTAATCACTCCTTTGGCGGAGAAGAGAA ATCTGCCACGAAATCAGTGGGGGTCCTACATTGACTCTCTCATTAAAGAGGCTGACTTTGGTGGGGACATACAGCAAAGGCTTTCTTGTGCTGGCATATT GTGTAGTGATGTTTACACTGAAGTCAGTAATGTGAATGATGTTGAACAACAATCACGAATTGCTAATGGGTTTACCCAAACAAATTTGTTCCAATCTGGA AGCATATCTTTTGCATCAGGGAAAAGGTCAGGGTTTCGGATTTTGATTGCTGGAGATACCCAATGCGGCCAGAGACATCTTGCAGCTTGTATACTTCACT TTTTCATTGGTAACGTTGAAATTTTGAAGGTTGATCTGGCAACAGTTTCCCAAGAAGGTCAGAGCGATATGGTACAAGGGATGATGCAGATATTAAAGAA ATGTGCTAGCCTGCAGAAATGCATGATATACATGCCACGAATTGATCTCTGGGCTATTGAGACTTGTCAACAGATTGATGAGAGTGATGAGTCCTCTATT CACCAACAACTTTCCTCAAAGGGAGAAGATTCTTCTCAAAATGCAGACCAGTCCTCCCATGAAATGGGTAACTCCTATACTATTGTGCGGACTGCTTCAC ATGCCTGGAGCTCATTCGTTGAGCAAGTGGAATCTCTTTGTGTGTCTACATCCTTGATGATTATGGCTACTTCGGACATTCCATATCTAGAACTACCTGA CAGAGTAAAGGAATTCTTTAAGAGTGACATCTCAAAGTGCAGTACTGCACTAGAGCATACTGTACCCCGGTTCTTCATAAATGTTGAAAGGTGCTCTGAC TACGAAGCAGTGATCAGTTCTTCAGCTTGGGAGTTATCACGGAATATGATACAGTTATTTGTGCAGTTGACTTATAAAAGAGCTCATGCCCGTACAAACT TATCCAAGAAGTGCAAATCATATAACATGGCCGAGAATCTCTCTGCTGCAGATGACGATACGTGTAAACAGAAGGAATCAAATAAAAATGTCGGAGGAAC GGATGGTCTTTCGGGCTCTTTTAGCACTGCACCAGCACCCAATAGTAGAGATCTAAAGGGAAAGTCAAACTTACTGCTGGCCATATCTACATTTGGCTAC CAGATTTTGATATATCCACATTTTGCTGAACTCTGTTGGGTGACATCAAAGCTTAAAGATGGGCCAGTTGCAGATGTGAGTGGCCCTTGGAGGATCTGGC CATTTAATAAGTGTATTGTTCGTCCTGGTAATTCGTTGGACAAGGTTCCTGTTGTTTCTGCATCTGGAAATATGAAAGCCAGAGACAAGTCAGGCTTCGC AAGGGGTTTAATTGCTGTTGGTTTACTAGCGTACAGAGGTACGTACCAATCTGTTAAAGAGGTATGCTTCGAGGTAAGGAAGGTTCTTGAGCTTCTAATG GAGCATATTAATGAAAAAATCCAAGCTGGAAAAGATAGGTACGTGTACGTTCCTTTGCTTTCTCAAGTGGCCTATATGGAGGATATGGTCAACAACTGGG CCTATGGACTATTGAGTTTGGAGGGCAATGGTCCGATGAAATCAGCATGTCCATCGACCACTTTGGAACTTCCAAATCATAATACCGATAATCCAGTAGC GAATGGGGAATGCATTATGGATGGTGCTTGCGGAATATCTGGTGAACCGGAATTACCAGAAGGCAAGCCCCAAATACCGTCTCTTGAGGATCTCAGGGGA ATTGAAACAACTACAGAAGCTAATGGCTTTGATGGTCATAATTCCAACCCAATAGCTGGGATAACAACCGATAAGTCTCCTCAGCTTATACTTCCTGTCA ATCATACTGACCCTGGGATGAACGTGGAAGATGCTTCCGCTGAACCAGCGGTTGGTGACAGTGGAAAGGAGCAAAATACGACAATTCATGGGCCCTCAAA AGATGGAGAGAAATGCGGTGCACTAAGTTCATCAACAGAGCCTTATAACTCTTCCGAAAATGGCTTCTGTGCACATGAAAACGTTGCCCTTCAGTCCGGC CCAGGTGAATCCAATGATGGCATGTTAAAGAATGGGTCTTTGAATAGCAATCCGCGTGATAATCCTAATGGTTCCAAGGGGGAGCATGGCGAGAGCATCA GCTTATCTCAAGACCAGCCTGATCCCGATGAATCTGGAGTTGTATGCGTGTATCATTGCTGTGCCAGATGCGTTGAAATCCTCCGCAGCTCGATTAAGAA AATCGTCGATCATAAAATGGAATCCTACATGAACCAGTTGACTGCAGAGGATGTTCATGACACATTTGCTTCTCTGTCAGTCAAGCTCGTTTCTTCGGTC AGAAAACTCGATGCCCGGTGTGAAGACGATATAACCAGCTCGTGTGAGGAGAACCAGAGACAAGAAAACTGCAACTGCGGAAGTTCAGGAGATATGTCTG CAACGCTCATGGAATGTAGTTTTCATTCTTGTGATGCTGATAATGGATGTGCGACTGCAAATGAAGCAAGTGGATCGGTGAAGAAGTCGCGTGGTGGAAT CCATCTTAGATTTGTGGTGAGAGATGGTATTCTTGTTCCTGCAGGTTCAGGAGCTGACAACGATTTTCCCTCCTTCCATTGTAAATATGAGGCTTTGTGC CTGTGTTCTCTTGTGGAGTTGGTAGCGACAATGAAGCAGCCCTTCGGTTGA
AA sequence Show only first row Show all	>Lus10017935 pacid=23147958 polypeptide=Lus10017935 locus=Lus10017935.g ID=Lus10017935.BGIv1.0 annot-version=v1.0 MQLKSSASGSVAAASPSRLSDFSSPAGSRVRPKRKKLDLICESVYNQNHTEPNAGVGTAASDLRRSSRVRRRPVVLDVSPPPVKKRNKLGKGVKSSAKKD VSGGSSRGRKKDEEEGEEETNLDGLDTPGSWKSRLRAMKRNARGGKRKLFAETVLEERVPSKKVESDEEEPVAAKTKRSARLKAIRGLMEELKEVDPVSS DDADVEKSADSDIEDSGKDQREVTNDDDDDDESSSSERETSGTDEENDDVDVDVDPLSEHVEMCEEEEKCGSDSLKSEKRIDGAGTLDNEETNDVEEIGL ENESGNGGETAREAGSLDNEETNDAEERGLENESGNEGETARENVDSDARASERSDDGGNDMDRVDKLDGVDDREAAAATVEEMPTAEKHLTEERKMEGD SVDISGSPRVKQGRRCGLCGCGTDGKPPKRSVQDGGESEAYCGSSASEECNYDVWDGFGDEPGWLGRLLGPINDRYGIAGIWVHQLCAVWSPEVYFAGLG CLKNIRAALCRGKALKCTRCGRRGATTGCRVDRCPRTYHLPCARVSGCIFDHRKFLIACTDHRHIFQPHDSQLLTRIKKLRAKKMKLEIRKLSNDAWRKD VEAEEKWLENCGEDEEFLKSVFSNLGITPPRGVLLHGYPGTGKTLVVRALIGACAQGDKKIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFF DEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSVEDRAAILALHTRRWPKPVSGALLKWIAHE TVGFAGADLQALCTQAVIISLKRNFPLHEVLSAATKKAPDAKRLPLPSFTVEERDWLEALSYAPPPCSRREAGMASYDLVSSALPTHLIPCLLYPLTVLL MSLYLDERLWLPPLLSKAGAMIESLITPLAEKRNLPRNQWGSYIDSLIKEADFGGDIQQRLSCAGILCSDVYTEVSNVNDVEQQSRIANGFTQTNLFQSG SISFASGKRSGFRILIAGDTQCGQRHLAACILHFFIGNVEILKVDLATVSQEGQSDMVQGMMQILKKCASLQKCMIYMPRIDLWAIETCQQIDESDESSI HQQLSSKGEDSSQNADQSSHEMGNSYTIVRTASHAWSSFVEQVESLCVSTSLMIMATSDIPYLELPDRVKEFFKSDISKCSTALEHTVPRFFINVERCSD YEAVISSSAWELSRNMIQLFVQLTYKRAHARTNLSKKCKSYNMAENLSAADDDTCKQKESNKNVGGTDGLSGSFSTAPAPNSRDLKGKSNLLLAISTFGY QILIYPHFAELCWVTSKLKDGPVADVSGPWRIWPFNKCIVRPGNSLDKVPVVSASGNMKARDKSGFARGLIAVGLLAYRGTYQSVKEVCFEVRKVLELLM EHINEKIQAGKDRYVYVPLLSQVAYMEDMVNNWAYGLLSLEGNGPMKSACPSTTLELPNHNTDNPVANGECIMDGACGISGEPELPEGKPQIPSLEDLRG IETTTEANGFDGHNSNPIAGITTDKSPQLILPVNHTDPGMNVEDASAEPAVGDSGKEQNTTIHGPSKDGEKCGALSSSTEPYNSSENGFCAHENVALQSG PGESNDGMLKNGSLNSNPRDNPNGSKGEHGESISLSQDQPDPDESGVVCVYHCCARCVEILRSSIKKIVDHKMESYMNQLTAEDVHDTFASLSVKLVSSV RKLDARCEDDITSSCEENQRQENCNCGSSGDMSATLMECSFHSCDADNGCATANEASGSVKKSRGGIHLRFVVRDGILVPAGSGADNDFPSFHCKYEALC LCSLVELVATMKQPFG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15120			P-loop containing nucleoside t...		Lus10017935 [exp]	0	1
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10036277 [exp]	2.4	0.8466
AT5G65540			unknown protein		Lus10035950 [exp]	4.2	0.7948
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	8.8	0.8052
AT1G56290			CwfJ-like family protein (.1)		Lus10022209 [exp]	9.4	0.8219
AT5G40340			Tudor/PWWP/MBT superfamily pro...		Lus10032141 [exp]	9.5	0.7708
AT4G23440			Disease resistance protein (TI...		Lus10032275 [exp]	11.0	0.7970
AT1G67690			Zincin-like metalloproteases f...		Lus10037058 [exp]	11.2	0.7936
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10019024 [exp]	12.8	0.8045
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10002702 [exp]	14.9	0.7760
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10033487 [exp]	17.0	0.7836

Compare expression of checked genes

Lus10017935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.