Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45000 756 / 0 AAA-type ATPase family protein (.1.2) AT5G43010 755 / 0 RPT4A regulatory particle triple-A ATPase 4A (.1) AT1G53750 333 / 2e-111 RPT1A regulatory particle triple-A 1A (.1) AT5G19990 331 / 7e-111 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 331 / 8e-111 RPT6A AAA-type ATPase family protein (.1) AT4G29040 322 / 6e-107 RPT2A regulatory particle AAA-ATPase 2A (.1) AT2G20140 322 / 8e-107 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT1G53780 323 / 1e-105 peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (.1.2.3) AT5G58290 305 / 6e-101 RPT3 regulatory particle triple-A ATPase 3 (.1) AT3G05530 295 / 2e-96 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041964 [exp] 806 / 0 AT1G45000 752 / 0.0 AAA-type ATPase family protein (.1.2) Lus10017475 [exp] 779 / 0 AT1G45000 759 / 0.0 AAA-type ATPase family protein (.1.2) Lus10028807 [exp] 767 / 0 AT1G45000 748 / 0.0 AAA-type ATPase family protein (.1.2) Lus10031815 [exp] 334 / 2e-111 AT1G53750 828 / 0.0 regulatory particle triple-A 1A (.1) Lus10031243 [exp] 334 / 5e-110 AT1G53750 841 / 0.0 regulatory particle triple-A 1A (.1) Lus10017762 [exp] 328 / 1e-109 AT5G19990 797 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10015524 [exp] 317 / 2e-106 AT2G20140 659 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10011901 [exp] 322 / 3e-105 AT2G20140 844 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10006976 [exp] 313 / 2e-103 AT4G29040 828 / 0.0 regulatory particle AAA-ATPase 2A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G158600 [exp] 773 / 0 AT1G45000 752 / 0.0 AAA-type ATPase family protein (.1.2) Potri.009G120500 [exp] 772 / 0 AT1G45000 744 / 0.0 AAA-type ATPase family protein (.1.2) Potri.005G231700 [exp] 766 / 0 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2) Potri.002G031400 [exp] 764 / 0 AT1G45000 745 / 0.0 AAA-type ATPase family protein (.1.2) Potri.006G216600 [exp] 333 / 2e-111 AT1G53750 804 / 0.0 regulatory particle triple-A 1A (.1) Potri.001G161700 [exp] 332 / 4e-111 AT1G53750 809 / 0.0 regulatory particle triple-A 1A (.1) Potri.018G056600 [exp] 329 / 8e-110 AT1G53750 803 / 0.0 regulatory particle triple-A 1A (.1) Potri.008G144100 [exp] 327 / 5e-109 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.010G098300 [exp] 323 / 2e-107 AT5G19990 768 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.002G252600 [exp] 323 / 4e-107 AT4G29040 838 / 0.0 regulatory particle AAA-ATPase 2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10017972 pacid=23147854 polypeptide=Lus10017972 locus=Lus10017972.g ID=Lus10017972.BGIv1.0 annot-version=v1.0 ATGTCTACCACTGAAGGCGAAGAAGCCGGAAGGCGGCGTACTGCGGTCGCCGAGTATCGGAAGAAGCTCCTTCAGCAGAGGGAACTCGAATCAAGAAGTC GCGCAGCAAAAGACAGTTTGCGGGTTTCAAAGAAGGAATATGCGAAAACCGAGGATGACCTGAAGTCGTTACAGAGTGTTGGACAGATCATTGGCGAAGT ACTTAGGCCACTTGACAATGAACGCATGATAGTTAAAGCAAGCAGCGGTCCGAGGTATGTGGTTGGCTGCCGTAGCAAAGTGGACAAAGAAAAGCTGACT GCTGGAACTCGCGTTGTTCTTGATATGACTACTCTGACGATCATGAGGGCTCTTCCCCGAGAAGTTGATCCAGTTGTATACAACATGCTCCACGAAGACC CCGGTAATGTTAGCTACTCTGCTGTTGGAGGGTTGTCGGATCAGATTCGGGAGCTCCGAGAATCCATAGAACTCCCTCTCATGAATCCTGAACTCTTTCT GAGAGTGGGGATTAAGCCTCCAAAGGGTGTTCTCCTTTACGGACCTCCAGGAACTGGGAAAACATTGTTAGCCAGGGCAATCGCGAGCAACATCGATGCC AACTTCCTAAAGGTTGTATCTAGTGCTATAATCGACAAGTACATTGGTGAAAGCGCGAGGTTGATTCGAGAGATGTTTAATTACGCTCGCGATCATCAAC CATGCATCATATTTATGGACGAGATCGATGCCATTGGTGGACGACGTTTCAGCGAAGGGACGAGCGCTGATCGTGAAATTCAACGAACTCTCATGGAGTT GCTTAATCAATTGGATGGATTTGACCAGCTCGGCAAGGTTAAAATGATCATGGCAACCAACAGACCGGATGTTCTGGATCCTGCTCTTCTTCGCCCGGGC CGTCTAGACAGGAAGATCGAGATTCCATTGCCGAATGAGCAGTCGAGGATGGAAATTCTCAAGATTCATGCTGCTGGCATTGCCAAACACGGCGAAATCG ACTATGAAGCAGTTGTGAAACTAGCTGAGGGTTTCAATGGCGCCGATCTTCGTAATGTATGTACCGAAGCCGGCATGTCTGCAATCCGTGCAGAACGCGA CTATGTCATCCATGAAGATTTCATGAAGGCCGTCAGAAAGTTGAATGAAGCGAAGAAACTCGAATCAAGTTCTCACTACAATGCTGATTTCGGGAAGGAA TGA
AA sequence Show only first row Show all	>Lus10017972 pacid=23147854 polypeptide=Lus10017972 locus=Lus10017972.g ID=Lus10017972.BGIv1.0 annot-version=v1.0 MSTTEGEEAGRRRTAVAEYRKKLLQQRELESRSRAAKDSLRVSKKEYAKTEDDLKSLQSVGQIIGEVLRPLDNERMIVKASSGPRYVVGCRSKVDKEKLT AGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA NFLKVVSSAIIDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPG RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSSHYNADFGKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45000			AAA-type ATPase family protein...		Lus10017972 [exp]	0	1
AT4G31300		PBA1	N-terminal nucleophile aminohy...		Lus10026984 [exp]	1.0	0.7971
AT2G01650		PUX2	plant UBX domain-containing pr...		Lus10021798 [exp]	2.0	0.7694
AT1G04690		KV-BETA1, KAB1	potassium channel beta subunit...		Lus10011751 [exp]	6.0	0.7689
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10010349 [exp]	6.0	0.7610
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10023053 [exp]	6.9	0.7170
AT4G24820			26S proteasome, regulatory sub...		Lus10014789 [exp]	8.4	0.7405
AT3G18940			clast3-related (.1)		Lus10021018 [exp]	10.6	0.6605
AT4G17420			Tryptophan RNA-binding attenua...		Lus10007800 [exp]	11.0	0.7098
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Lus10012203 [exp]	12.5	0.7364
AT1G53750		RPT1A	regulatory particle triple-A 1...		Lus10031243 [exp]	12.7	0.6890

Compare expression of checked genes

Lus10017972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.