Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 415 / 4e-124 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 395 / 1e-117 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 357 / 2e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G51630 352 / 4e-102 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT4G11170 341 / 5e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G69550 343 / 3e-98 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G46270 339 / 5e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 334 / 5e-96 TAO1 target of AVRB operation1 (.1) AT4G19510 329 / 4e-94 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G49140 324 / 7e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015648 [exp] 1050 / 0 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10009107 [exp] 993 / 0 AT4G12010 347 / 4e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10019654 [exp] 976 / 0 AT4G12010 376 / 2e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10023051 [exp] 834 / 0 AT4G12010 415 / 2e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015350 [exp] 827 / 0 AT4G12010 422 / 2e-127 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10008221 [exp] 823 / 0 AT4G12010 400 / 8e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10016029 [exp] 802 / 0 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10010221 [exp] 771 / 0 AT5G17680 369 / 4e-109 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10015650 [exp] 762 / 0 AT4G12010 346 / 3e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068200 [exp] 495 / 3e-155 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 489 / 6e-153 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 491 / 1e-150 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 484 / 1e-149 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 474 / 7e-146 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 461 / 3e-142 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G098900 [exp] 456 / 2e-140 AT5G17680 477 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 453 / 9e-139 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098500 [exp] 439 / 3e-136 AT5G17680 496 / 4e-157 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097800 [exp] 444 / 1e-135 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10018021 pacid=23147936 polypeptide=Lus10018021 locus=Lus10018021.g ID=Lus10018021.BGIv1.0 annot-version=v1.0 ATGGCTACTTCTTCTTCTTCACATCAAAATTCCACCATGTACACAGGAAAATGGGAATACGACGTGTTCCTCTGTTTCAGGGGAGCAGACACCCGCGACG GGTTTACAAGCCACCTCATGGATGCTCTGTCCAGCAACCAGATCAAGGCCTTCATCGACCACGACCACAACAAAACAGACAGCCTCCTCCACCTGCTCTC CGTCCTCAAAAGATCCGCTCTTTCTGTCGTCATCTTCTCCGAGAATTTCGCAGACTCTGCCTGGTGTTTGGAAGAGGTGGCCACTGTCTCCCTCAGTATG GAACAATTCGGGCATCGAGTGCTTCCGGTTTTCTACAAGGTGAGTCCCTCCGATGTGAAGGACGACTCCGGAAGCTATGCTGCTACCATCGATTGTCGGT TTGAAGCGAGTCATAAGACGGAGGATAGGAAGAGATGGAAGGATGCTTTGAAAGCTGTGGCCAATTCTGCTGGCCATACCTCGCGGGAGACTAAGATCGA TGCTGGGTTAATCAGGGTGATTGTGGAGGATGTTCAGAAGAGATTAACAGAGATATCGACAGTCATTAGGTACGATCATTTGGTCGGTATGGACACTCGT GTTTCGAACGTCGAACAACTGTTAGCCATGAACATGTTAGACGATGACGATGATGGTACACGTATTGTCGGACTTTGGGGAATGGGCGGAGTTGGTAAAA CCACTCTAGCCAAGACTTGCTATCAAAGAGTAACATCTTCATTGACAAACGGAGTGAAACTCAAACATCATATCGTTATGAACATCAATGATATTGAAAA GACCCGGTATGGGATCGAGACGATCGTACAAGAACTGTACTCGACTCTGCTGTCTGAGCGCAGTATAAGTGTCGACAGACTAGATGCTAGTTATAGAAGA CAGCGTCTTTCTCGAATGAGGGTGTTCGTCGTCCTTGATGACGTGGACACTCCTCGACAATTGGAGCAGCTTCTTCTGGGTAACATCCTCAATCTCACTA CACTCTTCAGTTCCGGGAGCAGAATCGTTATAACGACTCGAAACAGAAGGGTACTTGACCATGCCATGGCGCATGTGTACCATGTTGAAGGCTTGAATCC CGTCGAATCTCTCGAGCTCTTTAGCTTGCATGCGTTCAGAGAATCTGAACACATGCTAGCTGATGGCTGGATGTATCTATCACGTTTGGCCATGTCATAT TGCAAGGGAAGCCCGCTAGCCATAAAAGTGCTGGGCGGAGCGTTGTTTCGCAGAGACAGAAGCTACTGGGAGAGTCTGTTGTTCGAGTTGAGAAAGATTC CGAATCCGGAAATCCACGACGTTCTTAGGAGAAGCTACGACGCGTTGGGATTCGAAGAGAAGAGATTGTTTCTAGACGTTGCTTGTTTCCTGTTTGGACC TTCGAAAGGGAAGCTGATCAAGTATCTTGCAGCTAGTTATGGGTCTTCTGCCTACCGCAGAGTGGAGGATCTCATCGACAAGTCCTTGCTAGTTTGTAAT CCGGTGACTGATCATCGCGACCAGATTCAGGTTCACGATCTGTTAAAGGAAATGGCTTGGAACATCGTCAACGAGGAATCAGACCTTGCAAATCGTACCG GGATAAAGAATCCTGACGATGTTCGCAAACTGTTGGCAATTCCTGAAGAAAGAATCCGTCCATCAGGATTTCGCTGGTTGCATAGTTTGTGTTCTTGTTT CCTGATGAAGTATTGGCTCGACATTTTTTTCGAACCGGTCGGGGGGGATACATCGGATCGTGGAGGAGGAGGCAAAGCAATCGAAACATTAAGTATGAAT CTTTCGAGAGCCAAAGAGATGCATTTGGAAGCCAACGCATTCAAAGGGATGGATTCTCTTAGATATATGGAATTCTTCTCAGGAAAAGCAAAGATTGGAA CTCCCAAGATACATCTACCTAGTAATGGCCTTGACAATCTTCCTCATAGTTTAAGGTGGTTGCACTGGGATGGATTTCCTTCAAAATCTTTACCTTCGAG ATTTCGCCCCGAAAATCTCGTTGTTCTTATTATACGACACTGTCAAATAAGAAGGTGTTGGGAAGGAGTGGTTCAACCGGAGCTCGCGAGTCTGATAGCC CTCGACCTTTCCTACTGCACTGATCTAATTGAGGTGCCGAATCTTTCGAGGTGTCAGAACCTGGAACTGATTCGCCTGAAAGGTTGCAGCAGCCTAGTTG AGGTACCTTCCCATGTTCGACATTTGGAGAATCTGATTGAGCTGGACGTGAGCGAATGTCGAAATCTGAGGCGTCTTCCGGTCACATTTGACTCGACATG TCTTAAGATACTCCGTATGCCCAAATGTCCCAATCTGACTTTTTGCCCTGACATAAATTCAGGTGCAAATCTAGAGGTGCTGAATATAGAAGAGACAGCA TTCAGTGAGTTACCCAGTACAATCTACAAAGTCAAGCAAGGTGGCTCTCTACGTATCTGCGGCCAACACATCACTACCTTCCCTCGAATTTCGACAAGCT TGAAACTGTTTCGACTCTGCCATACCACAATGACAGAGATAGATGAAAAATACCAACTTGATGACCCTGAGGGTCAGGATTCTTCTTCAGAAGTGCGGAG ATTCGATCGACTCGAGTTGGTGGGGAACTCCCAACTCAAGAGCTTGTCACAGAGAATCTGGAAGATGGTGAAAAACGAACTCCTGATTCAGAATAACCCG TTGATCGAAAGTTTACCCGAGATAATTGCAAACAACGACGACTTAACTGAGCTTTACGTAGGAACCTGTCGAGACCTGAAGAGCTTTCCATCTGGTATCT GCAATCTGAAATATTTGCAGGTTCTCCGTTTCATGCGAACAGCTATCACTTCCCTGCCTTCCTCTGTCCCCGAAATGGATCAGCTTCGTGTTCTAAATTT GTCCTTCTGCGAAAGCCTCGAGTTCTTACCTGGTAACATCAGTAAACTTGTCAAACTATACATATTGTTTCTGAAGGGATGTTCCAGGATCCAGTCTTTG CCGACGTTTCCACCTAATCTACACGAATGCGAGTTGAGTGGTTGCACGTCATTACAAGCTCTGCCAAACAACACCGGGGAGCTGACAAATTTGTCAGAAT TTACGTTCGAAAACTGCCCACTGTTGGACAGGAGTTTGCCCCACCAACTCACAGCAAATTTCTACGATCATGCCGCAAAGTCTGTGTACCCTAAGGGCAT CCTAGTGTGTTCAGGGAGTGAGCTTCCGAAGTGGTGCAGTGCGAATTACAACAACCACGACGAGGACGATTGCTGTGTGGAAGTGAAGTTGCTCCCTAGA GCAGATAGTGGCAGTAGTAGTAGTAGCATTAGTGAGCAACAAATGATGATCAAGGGGATTGCATTTGGCGTTGTGCTATCGGTGGATGTACCAACAGTTG CGTTGCATCTTAACTGTGATTGTAGTGACCGCCAAAGCAACATCACTACTACTAATACTACCACAGTTTCTTTTCCGGGTTTGGCATTTCGGATTTACGG TGGTGAGGCGGTAGGATCGTCAGAGTACGTATGTCTGTGTTTTAACAAGAAGTTATCGGGTGAGCAGAGCACGGAAGGAATCAAGGTGGAGCAACAAGAA GAAGAAACCGCAGCTTGGTTTGCGAAACGTGCTGGACGGGTCGTTTCGTTTCGAGTTTACCCGCAAATACGGGGAGAAGATCCCAGGATATTAAAGAGTG TCAAAATCAGAAGCATTGCCGTTTCTCTGCTCTACTGA
AA sequence Show only first row Show all	>Lus10018021 pacid=23147936 polypeptide=Lus10018021 locus=Lus10018021.g ID=Lus10018021.BGIv1.0 annot-version=v1.0 MATSSSSHQNSTMYTGKWEYDVFLCFRGADTRDGFTSHLMDALSSNQIKAFIDHDHNKTDSLLHLLSVLKRSALSVVIFSENFADSAWCLEEVATVSLSM EQFGHRVLPVFYKVSPSDVKDDSGSYAATIDCRFEASHKTEDRKRWKDALKAVANSAGHTSRETKIDAGLIRVIVEDVQKRLTEISTVIRYDHLVGMDTR VSNVEQLLAMNMLDDDDDGTRIVGLWGMGGVGKTTLAKTCYQRVTSSLTNGVKLKHHIVMNINDIEKTRYGIETIVQELYSTLLSERSISVDRLDASYRR QRLSRMRVFVVLDDVDTPRQLEQLLLGNILNLTTLFSSGSRIVITTRNRRVLDHAMAHVYHVEGLNPVESLELFSLHAFRESEHMLADGWMYLSRLAMSY CKGSPLAIKVLGGALFRRDRSYWESLLFELRKIPNPEIHDVLRRSYDALGFEEKRLFLDVACFLFGPSKGKLIKYLAASYGSSAYRRVEDLIDKSLLVCN PVTDHRDQIQVHDLLKEMAWNIVNEESDLANRTGIKNPDDVRKLLAIPEERIRPSGFRWLHSLCSCFLMKYWLDIFFEPVGGDTSDRGGGGKAIETLSMN LSRAKEMHLEANAFKGMDSLRYMEFFSGKAKIGTPKIHLPSNGLDNLPHSLRWLHWDGFPSKSLPSRFRPENLVVLIIRHCQIRRCWEGVVQPELASLIA LDLSYCTDLIEVPNLSRCQNLELIRLKGCSSLVEVPSHVRHLENLIELDVSECRNLRRLPVTFDSTCLKILRMPKCPNLTFCPDINSGANLEVLNIEETA FSELPSTIYKVKQGGSLRICGQHITTFPRISTSLKLFRLCHTTMTEIDEKYQLDDPEGQDSSSEVRRFDRLELVGNSQLKSLSQRIWKMVKNELLIQNNP LIESLPEIIANNDDLTELYVGTCRDLKSFPSGICNLKYLQVLRFMRTAITSLPSSVPEMDQLRVLNLSFCESLEFLPGNISKLVKLYILFLKGCSRIQSL PTFPPNLHECELSGCTSLQALPNNTGELTNLSEFTFENCPLLDRSLPHQLTANFYDHAAKSVYPKGILVCSGSELPKWCSANYNNHDEDDCCVEVKLLPR ADSGSSSSSISEQQMMIKGIAFGVVLSVDVPTVALHLNCDCSDRQSNITTTNTTTVSFPGLAFRIYGGEAVGSSEYVCLCFNKKLSGEQSTEGIKVEQQE EETAAWFAKRAGRVVSFRVYPQIRGEDPRILKSVKIRSIAVSLLY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12010			Disease resistance protein (TI...		Lus10018021 [exp]	0	1
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10015988 [exp]	5.4	0.8800
					Lus10003285 [exp]	8.0	0.8355
AT1G18880		NRT1.9	nitrate transporter 1.9, Major...		Lus10015351 [exp]	8.7	0.7445
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10027745 [exp]	9.8	0.8355
					Lus10000363 [exp]	11.3	0.8355
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10041558 [exp]	12.6	0.8355
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10022134 [exp]	13.9	0.8355
					Lus10004996 [exp]	15.0	0.8355
AT3G22740		HMT3	homocysteine S-methyltransfera...		Lus10039356 [exp]	15.1	0.7006
AT1G61330			FBD, F-box and Leucine Rich Re...		Lus10006726 [exp]	16.0	0.8355

Compare expression of checked genes

Lus10018021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.