Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03670 754 / 0 CDC48B cell division cycle 48B (.1) AT5G03340 399 / 6e-129 ATPase, AAA-type, CDC48 protein (.1) AT3G53230 399 / 1e-128 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 385 / 2e-123 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT3G01610 297 / 3e-90 CDC48C, EMB1354 embryo defective 1354, cell division cycle 48C (.1) AT3G56690 264 / 1e-76 CIP111 Cam interacting protein 111 (.1) AT5G08470 220 / 5e-61 EMB2817, PEX1 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) AT3G05530 196 / 7e-56 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1) AT5G19990 194 / 2e-55 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 194 / 2e-55 RPT6A AAA-type ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042029 [exp] 1076 / 0 AT2G03670 826 / 0.0 cell division cycle 48B (.1) Lus10021441 [exp] 394 / 5e-127 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10037385 [exp] 393 / 2e-126 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021442 [exp] 386 / 5e-124 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 386 / 6e-124 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 381 / 6e-122 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10001402 [exp] 337 / 4e-108 AT3G53230 803 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10023018 [exp] 342 / 2e-107 AT5G03340 1419 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10020255 [exp] 314 / 2e-94 AT3G56690 1066 / 0.0 Cam interacting protein 111 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G128700 [exp] 837 / 0 AT2G03670 766 / 0.0 cell division cycle 48B (.1) Potri.017G108200 [exp] 405 / 2e-131 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.016G091600 [exp] 403 / 2e-130 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G125500 [exp] 401 / 8e-130 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.012G088200 [exp] 400 / 1e-129 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.015G080600 [exp] 400 / 2e-129 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.013G151600 [exp] 278 / 3e-83 AT3G01610 747 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Potri.006G035000 [exp] 254 / 7e-73 AT3G56690 1080 / 0.0 Cam interacting protein 111 (.1) Potri.001G174100 [exp] 222 / 1e-61 AT5G08470 1259 / 0.0 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) Potri.013G016800 [exp] 196 / 4e-56 AT3G05530 800 / 0.0 regulatory particle triple-A ATPase 5A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10018033 pacid=23147905 polypeptide=Lus10018033 locus=Lus10018033.g ID=Lus10018033.BGIv1.0 annot-version=v1.0 ATGGAAGCTGAAAGTAGCAGCAGCAGCTTGAGCTGCACCAATATTGCTGACACTGACCCCTCCAAATTCGGAGAGAAGAAGAGATGGAGAGCCGAAGAAG CAATTGCAGGAAATACAGCAGCACTCGATTCCCTTAGAGAACTCATCGTGTTCCCTCTTCTCTATTCTCGTGAAGCTCGAAAGCTCGGCCTTAAGTGGCC AACGGGGCTGCTTTTGTACGGTCCACCAGGAACTGGAAAGACGAGTCTTGTTCGTGCAGTTGTTCAGGAATCTGGTGCATATTTAGTTGTAATTAGCCCA CATTCTGTTCACAGAGCACATGCTGGGGAAAGCGAAAGGATTTTGAGAGAGGCATTTGCTGATGCATCGTCAAATGCCGTCGCAGGAAAACCGTCGGTTG TGTTTATAGATGAAATAGATGCGATGTGTCCTCGTCGTGATTCTCGGAGAGAGCAAAATGTTCGTATAGTTTCTCAACTCTGCGCGCTGATGGATGCCAT GAAGCCCTCTTCAGTTTCTTCAGGGCATATTGTTGTGGTTGCATCAACCAACAGAGTTGATGCAGTTGATTCTGCACTTAGAAGGTCTGGGCGTTTTGAT AATGAAATAGAAGTGACAACACCTACAGAAGATGAACGTTTGCAGATCCTCAAGCTCTATACAAAGAAGTTACCGTTGGATAGTGATGTCGACTTGCATT CCGTTGCTGCTTCATGTAATGGATATGTTGGGGCTGACCTGGAAGCTTTGTGTCGTGAAGCCACCATGTCAGCCATTAAGTCAGCTGATGCCAGAGGAGT TGCTGCTCCTCTTTGCTTAAGAACAGAAGACTGGAAGCATGCAAGGGTTGTTGTTGGTCCTAGCATAACACGAGGTGTGACAGTTGAAATACCACAAGTG TCCTGGGAAGATATTGGTGGACTGAAGGATTTGAAGAAGAAACTCCAACAAGCAGTTGAGTGGCCTATTAAACATCAGTCTGCATTTTCAAGAATGGGAA TTTCTCCCATACGTGGGGTTCTTTTGCATGGACCTCCTGGATGTTCCAAAACAACTCTTGCTAAAGCTGCAGCCAATGGCGCTCAAGCTTCTTTCTTTTC ATTGAGGTATGGACATCTAGACCAGACTGTATTCAGTGGTGCAGAATTATTTTCAATGTATGTTGGAGAGGGTGAAGCATTACTGCGCAACACATTCCAA AGAGCTCGTGTGGCAGCTCCTAGCATAATCTTCTTTGACGAAGCCGATGTTGTGGCTGGTAAACGAGGTGACAGTTCAAGTAATTCATCCACAGTAGGGG AGAGGCTTTTATCTACTCTACTGACTGAAATGGATGGTCTGCAACAAGCAAAAGGTATCCTTGTGCTGGCGGCCACAAATCGTCCACAAGCAATAGATGC TGCACTGATGCGCCCTGGACGTTTTGACTTGGTATTGTATGTGCCACCCCCTGATGAGGAGGCTCGTCTTGAGATCCTCAATGTCCATACACGAACCATG AGCGTGGGGGATGATGTTGACCTTAAAACTATAGCGGAGAATACTGAGCTGTTCACAGGTGCTGAGCTAGAAGGTCTTTGTCGCGAAGCTGGGATTGTAG CTCTGAGAGAAGATATTTTTGCCAATGTCGTCAGCAACAAACATTTCCAGGCAGTGTTGGAGTCTCTGAAACCAGCACTAACCATAGAAGATATAGAAGA GTACTCGTCGTTCCTGAAGACACAGCATATCAGATCGCCTGGCAAGACCGGAGAATCAGCCATTGTCGATAACAGCAACGCCAAAACAAATAGGCCGCTG GATTCAAAGTTGACTGTGATTAAAGTTGGGGTTTTGAGTGTATTGGTTTTAGCTGCTGCAAAATATCTTCACTTTTATACACAGTCAGCCAGAGCAGATG TATCAGTTAGGTACTCTCCTACTTAA
AA sequence Show only first row Show all	>Lus10018033 pacid=23147905 polypeptide=Lus10018033 locus=Lus10018033.g ID=Lus10018033.BGIv1.0 annot-version=v1.0 MEAESSSSSLSCTNIADTDPSKFGEKKRWRAEEAIAGNTAALDSLRELIVFPLLYSREARKLGLKWPTGLLLYGPPGTGKTSLVRAVVQESGAYLVVISP HSVHRAHAGESERILREAFADASSNAVAGKPSVVFIDEIDAMCPRRDSRREQNVRIVSQLCALMDAMKPSSVSSGHIVVVASTNRVDAVDSALRRSGRFD NEIEVTTPTEDERLQILKLYTKKLPLDSDVDLHSVAASCNGYVGADLEALCREATMSAIKSADARGVAAPLCLRTEDWKHARVVVGPSITRGVTVEIPQV SWEDIGGLKDLKKKLQQAVEWPIKHQSAFSRMGISPIRGVLLHGPPGCSKTTLAKAAANGAQASFFSLRYGHLDQTVFSGAELFSMYVGEGEALLRNTFQ RARVAAPSIIFFDEADVVAGKRGDSSSNSSTVGERLLSTLLTEMDGLQQAKGILVLAATNRPQAIDAALMRPGRFDLVLYVPPPDEEARLEILNVHTRTM SVGDDVDLKTIAENTELFTGAELEGLCREAGIVALREDIFANVVSNKHFQAVLESLKPALTIEDIEEYSSFLKTQHIRSPGKTGESAIVDNSNAKTNRPL DSKLTVIKVGVLSVLVLAAAKYLHFYTQSARADVSVRYSPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03670		CDC48B	cell division cycle 48B (.1)		Lus10018033 [exp]	0	1
AT2G37990			ribosome biogenesis regulatory...		Lus10019422 [exp]	5.7	0.8750
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10000421 [exp]	7.3	0.8954
AT5G62290			nucleotide-sensitive chloride ...		Lus10038909 [exp]	8.8	0.8647
AT4G15640			unknown protein		Lus10033970 [exp]	15.8	0.8747
AT1G04945			HIT-type Zinc finger family pr...		Lus10026116 [exp]	18.2	0.8335
AT5G26180			S-adenosyl-L-methionine-depend...		Lus10025004 [exp]	19.0	0.8577
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Lus10040434 [exp]	22.4	0.8665
AT2G47580		U1A	spliceosomal protein U1A (.1)		Lus10008424 [exp]	25.3	0.8410
AT3G23620			Ribosomal RNA processing Brix ...		Lus10035575 [exp]	28.4	0.8408
AT1G10930		ATSGS1, RECQL4A...	DNA helicase (RECQl4A) (.1)		Lus10015467 [exp]	28.7	0.8511

Compare expression of checked genes

Lus10018033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.