Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20990 248 / 1e-81 ATACA4, ACA4 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) AT1G08080 246 / 1e-80 ATACA7, ACA7 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) AT4G21000 205 / 1e-64 ATACA6, ACA6 A. THALIANA ALPHA CARBONIC ANHYDRASE 6, alpha carbonic anhydrase 6 (.1) AT2G28210 202 / 2e-64 ATACA2 alpha carbonic anhydrase 2 (.1) AT1G08065 202 / 3e-63 ATACA5, ACA5 alpha carbonic anhydrase 5 (.1) AT5G04180 194 / 2e-60 ATACA3, ACA3 alpha carbonic anhydrase 3 (.1) AT3G52720 172 / 1e-51 CAH1, ATACA1, ACA1 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) AT2G18740 137 / 2e-40 Small nuclear ribonucleoprotein family protein (.1.2) AT4G30330 136 / 3e-40 Small nuclear ribonucleoprotein family protein (.1) AT5G56330 135 / 1e-36 ATACA8, ACA8 A. THALIANA ALPHA CARBONIC ANHYDRASE 8, alpha carbonic anhydrase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042030 [exp] 602 / 0 AT4G20990 313 / 9e-107 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10021455 [exp] 263 / 3e-87 AT1G08080 343 / 1e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10016104 [exp] 260 / 6e-86 AT1G08080 344 / 7e-120 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10016105 [exp] 258 / 3e-85 AT1G08080 333 / 1e-115 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10018017 [exp] 253 / 2e-82 AT4G20990 240 / 4e-78 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10014412 [exp] 251 / 4e-82 AT1G08080 277 / 2e-93 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10023915 [exp] 250 / 6e-82 AT1G08080 275 / 2e-92 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10042013 [exp] 239 / 1e-77 AT4G20990 224 / 2e-72 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10021456 [exp] 234 / 6e-77 AT1G08080 288 / 4e-99 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G043700 [exp] 326 / 5e-112 AT4G20990 306 / 4e-105 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G047400 [exp] 323 / 7e-111 AT4G20990 289 / 4e-98 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.004G212800 [exp] 274 / 9e-92 AT1G08080 347 / 3e-121 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.009G010200 [exp] 268 / 3e-89 AT1G08080 342 / 3e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.006G047500 [exp] 254 / 8e-84 AT4G20990 276 / 5e-93 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G121900 [exp] 249 / 1e-81 AT1G08080 289 / 4e-98 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.006G212900 [exp] 179 / 1e-54 AT3G52720 261 / 5e-87 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) Potri.016G079600 [exp] 171 / 2e-51 AT3G52720 271 / 8e-91 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) Potri.018G096200 [exp] 144 / 1e-43 AT4G30330 166 / 3e-55 Small nuclear ribonucleoprotein family protein (.1) Potri.006G174000 [exp] 144 / 1e-43 AT4G30330 166 / 3e-55 Small nuclear ribonucleoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00194 [flax] [poplar] Carb_anhydrase Eukaryotic-type carbonic anhydrase CL0527 [flax] [poplar] Sm-like PF01423 [flax] [poplar] LSM LSM domain
Representative CDS sequence Show only first row Show all	>Lus10018034 pacid=23147942 polypeptide=Lus10018034 locus=Lus10018034.g ID=Lus10018034.BGIv1.0 annot-version=v1.0 ATGGCGAGCACTAAGGTTCAAAGGATTATGACCCAACCCATTAAAGCTCGTATCCAGATTTGGCTGTTTGAGCAGAAGGATATGAGAATTGAAGGCCGAA TTATCGGTTTTGATGAGTACATGAACTTGGTCTTGGATGATGCCGAGGAGGTCAATGTCAAGAAGAAGAGCAGAAAGTCCCTAGGGAGGATTCTTCTGAA AGGAGACAACATCACCCTGATGATGAACACACCCTCAGCTTCCTCCAGCATTACAACAATAAAGAAGTTACTGGCCACTCTCTTCCTTCTCTATGTGGCA TTCTCTACCGCTTCTTCTGACGATGGCGAAGTTGTGTGTAAGAATGGGAGCTTACAGTCTCCAATTGACCTTCTGGATGCAAGGGTGGAAATCCTTTCCA ATCTGGGGAAGCTGAACAGAGACTACAAACCAGCTACTGCTTCTGTCAAGAACAGGGGACATGATGTCACAGTGTTCTGGAAAGGAGATGCAGGGGAGAT CAAGATCAACGGTAGTCAATACAAGCTGCTGCAATGTCATTGGCATTCTCCATCTGAGCACACTTTCAATGGTTCAAGGTATGAGCGGGAGCTTCACTTG GTGCATAAAAGCTACGAAGGGAATCTGGCGGTGGTTGCAATAGTCTACAAATACGGGCGTCGTGACCGAAGGCTTTCCGAGTTGTTCCATCACATAAGGT CAGTGGAGAGAAAGAAAGAGAAGGATTTGGGAATAATGAACCCAGGAGATATCAAGGTTGGTAGCAGGAAGTACTACAGATACATTGGCTCTCTCACTGT TCCTCCATGCACTGAAGGTGTTATCTGGACCATTGTCAAGAAGGTTAGGACAGTCTCGAGGGAGCAAGTTAGAGCCTTAAGGGAAGCAGTCCATGATGGA TTTGAAGCAAATGCAAGGCCAGTTCAACCGTTGGATGGAAGGCCGGTATACCAGTATGGTCCATAA
AA sequence Show only first row Show all	>Lus10018034 pacid=23147942 polypeptide=Lus10018034 locus=Lus10018034.g ID=Lus10018034.BGIv1.0 annot-version=v1.0 MASTKVQRIMTQPIKARIQIWLFEQKDMRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKSLGRILLKGDNITLMMNTPSASSSITTIKKLLATLFLLYVA FSTASSDDGEVVCKNGSLQSPIDLLDARVEILSNLGKLNRDYKPATASVKNRGHDVTVFWKGDAGEIKINGSQYKLLQCHWHSPSEHTFNGSRYERELHL VHKSYEGNLAVVAIVYKYGRRDRRLSELFHHIRSVERKKEKDLGIMNPGDIKVGSRKYYRYIGSLTVPPCTEGVIWTIVKKVRTVSREQVRALREAVHDG FEANARPVQPLDGRPVYQYGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Lus10018034 [exp]	0	1
AT1G18600		ATRBL12	ARABIDOPSIS RHOMBOID-LIKE PROT...		Lus10007614 [exp]	15.4	0.6765
AT3G21480			BRCT domain-containing DNA rep...		Lus10012790 [exp]	30.5	0.6708
AT1G63250			DEA(D/H)-box RNA helicase fami...		Lus10034109 [exp]	45.9	0.6634
AT5G44740		POLH	Y-family DNA polymerase H (.1....		Lus10038376 [exp]	46.0	0.6155
AT3G01580			Tetratricopeptide repeat (TPR)...		Lus10034497 [exp]	90.0	0.6219
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Lus10031508 [exp]	91.9	0.6336
AT2G37440			DNAse I-like superfamily prote...		Lus10024427 [exp]	108.1	0.6295
AT3G12660		FLA14	FASCICLIN-like arabinogalactan...		Lus10000415 [exp]	130.2	0.5617
AT3G57570			ARM repeat superfamily protein...		Lus10026304 [exp]	162.3	0.5651
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Lus10042030 [exp]	202.6	0.5855

Compare expression of checked genes

Lus10018034 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.