Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10290 501 / 5e-180 Nucleotide-sugar transporter family protein (.1) AT5G04160 499 / 1e-179 Nucleotide-sugar transporter family protein (.1) AT3G11320 430 / 1e-152 Nucleotide-sugar transporter family protein (.1) AT5G05820 425 / 2e-150 Nucleotide-sugar transporter family protein (.1) AT1G12500 339 / 5e-116 Nucleotide-sugar transporter family protein (.1) AT1G77610 149 / 2e-42 EamA-like transporter family protein (.1) AT1G21870 147 / 3e-41 GONST5 golgi nucleotide sugar transporter 5 (.1) AT5G25400 118 / 2e-30 Nucleotide-sugar transporter family protein (.1) AT5G11230 115 / 1e-29 Nucleotide-sugar transporter family protein (.1) AT4G32390 107 / 2e-26 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042039 [exp] 573 / 0 AT3G10290 526 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10009878 [exp] 425 / 3e-150 AT3G11320 548 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10016446 [exp] 413 / 7e-146 AT5G05820 508 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10040234 [exp] 413 / 1e-145 AT3G11320 527 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10028255 [exp] 412 / 2e-145 AT3G11320 523 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10014832 [exp] 406 / 1e-142 AT3G11320 530 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10006684 [exp] 298 / 3e-101 AT1G12500 439 / 2e-156 Nucleotide-sugar transporter family protein (.1) Lus10007029 [exp] 283 / 3e-94 AT1G12500 457 / 2e-162 Nucleotide-sugar transporter family protein (.1) Lus10025645 [exp] 159 / 3e-46 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G043200 [exp] 526 / 0 AT5G04160 512 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.006G046600 [exp] 509 / 0 AT5G04160 503 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.010G194100 [exp] 436 / 4e-155 AT3G11320 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.008G063400 [exp] 435 / 1e-154 AT3G11320 566 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.001G247600 [exp] 428 / 6e-152 AT3G11320 476 / 4e-171 Nucleotide-sugar transporter family protein (.1) Potri.009G040800 [exp] 408 / 8e-144 AT5G05820 472 / 2e-169 Nucleotide-sugar transporter family protein (.1) Potri.003G118000 [exp] 363 / 3e-125 AT1G12500 503 / 4e-180 Nucleotide-sugar transporter family protein (.1) Potri.001G114100 [exp] 349 / 5e-120 AT1G12500 483 / 8e-172 Nucleotide-sugar transporter family protein (.1) Potri.005G177200 [exp] 151 / 4e-43 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1) Potri.002G084500 [exp] 145 / 7e-41 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10018043 pacid=23147868 polypeptide=Lus10018043 locus=Lus10018043.g ID=Lus10018043.BGIv1.0 annot-version=v1.0 ATGGCGGCACAATCATCAAATTCATCATCCTCCTCCTCCATTTCTCCATCCTCGTCGAGGAAACAAGCCGTGTTCATAGTGTCGCTGGTGACGCTATGGT ACTCGTCGAACATCGGAGTCCTCCTCCTGAACAAGTACCTCCTCTCCAATTACGGATTCAGATTCCCAATCTTCCTCACAATGTGCCACATGTCCGCCTG CGCAATCCTCTCCTACCTCTCCATCGTCTTCCTCAAGGTCGTCCCTCTACAGACCTTGAAATCTCGACCTCAGCTCCTCAAGATCTCAACGCTCAGCGTC GTCTTCTGCGCCTCCGTCGTCGGCGGCAATGTCTCCCTCCGCTACCTCCCCGTCTCTTTCAATCAGGCCGTTGGAGCTACCACCCCGTTCTTCACCGCCG TCTTCGCCTACTTGATGACCTTCAAGCGGGAGGCCTGGGTCGTTTACTGCGCCCTCGTTCCCGTCGTTGTCGGCGTCGTCATCGCCAGCGGGGGTGAGCC GGGATTTCACTTGTTTGGATTCATCATGTGCATTAGCGCAACTGCTGCAAGGGCTTTCAAGTCGGTTCTTCAAGGCATTCTGCTTTCTTCAGACGGAGAG AAGTTGAACTCGATGAACTTGCTACTCTACATGTCACCGATCGCAGTTTTCGTGCTAGTGCCTGCTGTGATCGTGATGGAGCCTGATGTACTTAGTATCA CCTTGTCACTCGGGAGGAAAGATAAGTTCTTGTGGCTGCTACTTATACTCAATTCAACGCTGGCCTATTCCGCCAACTTGACAAACTTCTTGGTCACTAA GCATACCAGCGCATTAACACTCCAGGTGCTGGGGAACGCGAAAGGCGCTGTAGCTGTCGTAATCTCGATATTCATATTCAGGAACCCAGTCACGGTCCTG GGAATCGGTGGATACACCATAACAGTACTCGGCGTGGTTGCTTATGGAGAGGCCAAGAGAAGGTTTAGATGA
AA sequence Show only first row Show all	>Lus10018043 pacid=23147868 polypeptide=Lus10018043 locus=Lus10018043.g ID=Lus10018043.BGIv1.0 annot-version=v1.0 MAAQSSNSSSSSSISPSSSRKQAVFIVSLVTLWYSSNIGVLLLNKYLLSNYGFRFPIFLTMCHMSACAILSYLSIVFLKVVPLQTLKSRPQLLKISTLSV VFCASVVGGNVSLRYLPVSFNQAVGATTPFFTAVFAYLMTFKREAWVVYCALVPVVVGVVIASGGEPGFHLFGFIMCISATAARAFKSVLQGILLSSDGE KLNSMNLLLYMSPIAVFVLVPAVIVMEPDVLSITLSLGRKDKFLWLLLILNSTLAYSANLTNFLVTKHTSALTLQVLGNAKGAVAVVISIFIFRNPVTVL GIGGYTITVLGVVAYGEAKRRFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10290			Nucleotide-sugar transporter f...		Lus10018043 [exp]	0	1
AT1G32860			Glycosyl hydrolase superfamily...		Lus10001660 [exp]	2.0	0.8636
AT1G61790			Oligosaccharyltransferase comp...		Lus10018363 [exp]	5.6	0.8784
AT3G10290			Nucleotide-sugar transporter f...		Lus10042039 [exp]	6.9	0.8649
AT1G29790			S-adenosyl-L-methionine-depend...		Lus10025384 [exp]	8.0	0.8695
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10037423 [exp]	12.6	0.8615
AT3G28720			unknown protein		Lus10033020 [exp]	13.2	0.8567
AT2G26730			Leucine-rich repeat protein ki...		Lus10017756 [exp]	15.0	0.8526
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10033164 [exp]	17.7	0.8039
AT1G12500			Nucleotide-sugar transporter f...		Lus10007029 [exp]	18.0	0.8500
AT2G26110			Protein of unknown function (D...		Lus10024988 [exp]	19.4	0.8339

Compare expression of checked genes

Lus10018043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.