Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50130 377 / 2e-130 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G24050 271 / 7e-89 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G64590 228 / 3e-72 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G37540 215 / 2e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G02540 206 / 1e-63 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23430 206 / 1e-63 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G23420 202 / 2e-62 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G11410 194 / 3e-59 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G15940 71 / 2e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G04070 65 / 2e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042088 [exp] 504 / 4e-180 AT5G50130 460 / 3e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10003204 [exp] 258 / 1e-83 AT4G24050 499 / 3e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10017308 [exp] 244 / 3e-78 AT4G24050 495 / 1e-177 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10023762 [exp] 222 / 6e-70 AT2G37540 429 / 8e-152 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032281 [exp] 206 / 6e-64 AT4G11410 447 / 2e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024415 [exp] 206 / 7e-64 AT5G02540 471 / 4e-168 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035481 [exp] 205 / 2e-63 AT4G23430 479 / 6e-172 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10028781 [exp] 204 / 5e-63 AT4G11410 470 / 3e-168 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10031101 [exp] 201 / 1e-61 AT4G23430 478 / 1e-171 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G081102 [exp] 371 / 3e-128 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.T124508 [exp] 371 / 3e-128 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.012G087800 [exp] 355 / 5e-122 AT5G50130 426 / 4e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.001G086900 [exp] 243 / 9e-78 AT4G24050 441 / 2e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G144100 [exp] 232 / 2e-73 AT4G24050 397 / 9e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G083900 [exp] 218 / 3e-68 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G103000 [exp] 207 / 4e-64 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128800 [exp] 206 / 8e-64 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.003G128700 [exp] 199 / 3e-61 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G143800 [exp] 192 / 2e-58 AT4G23420 427 / 3e-151 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10018092 pacid=23147946 polypeptide=Lus10018092 locus=Lus10018092.g ID=Lus10018092.BGIv1.0 annot-version=v1.0 ATGAAGGCAACAGTGAAGTACTTGGCAGGCATTGCAGGGCCAAGTGGGTATGGCTCCAAATCTACAGCTGACCAAGTCACACAACATGTCCACCTTCCCT CTTCTTCTTCTTCTTCTTCTCCTTCTTCTTCTTCCTCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGTACCCAGCCATCATCACTGGGGCGACATC AGGGATAGGAGTGGAGACAGCAAGAGTGTTGGCAAAGAGAGGAGTGAGAGTGGTGATAGCAGCAAGAGACATCAACAGAGCTTCTAAAGTGAGACAAGCA ATACTCGATCAGAATACTGAAGCTGACATAATAGTGCTGGAGCTTGATTTGAGCTCTTTTGCATCCATCTCAGCTTTCTCCCACCACTTTCTATCTCTGG GCCTTCCACTACACATCCTCATGTACTGCTTACTTACTAAGCTGGGAATTGGGCCTTCTGAGCTCACTGCAGCCCGTAACGTCTGTTGCTTAACTTTGGG GGTTGCAGGGCATTTCTTGCTGACAGAGTTGTTGATGGAGAAGATGATAGAAACAGCAGAAGAGCGTGGGATCCATGGCAGAATCATCAACCTTTCCTCG GCAATTCACAGCTGGGTGAAGAAGGAATCTTTCTCCTTCCAAAAGATGATGAACCCAGCAGCAGCCAAGTATAATGGGACACGTGCATATGCTCAGACAA AGCTGGCTGCCATTTTGCATGCCAAGGAACTCTCCCGACAGCTCAAGGCTAGAAATGCTAAAGTGACAGTTAATGCTGTACATCCAGGCATTATTAAAAC TGGCATCATCAGAGCCCACAAGGGATTCCTCACAGATTCAGTATATTTCATTGCCTCCAAGCTGCTGAAATCTGTACCACAGGGAGCATCAACCACATGC TATGTAGCATTGAGTCCAAAAACAGAGGGAGTGGGGGGGAAATACTTTGCAGACTGCAATGAGAGCAACTGTTCATCTTTAGGGAATGATGATGCTGAAG CACTCAAGCTCTGCCACCTTACTCGTGCATTTATCCACAGAAGATTGTTATTGCAGCAGCAGCAGGCCACCACTACTACTCAAACTAAAACTGCTACCTC AAGATCATGA
AA sequence Show only first row Show all	>Lus10018092 pacid=23147946 polypeptide=Lus10018092 locus=Lus10018092.g ID=Lus10018092.BGIv1.0 annot-version=v1.0 MKATVKYLAGIAGPSGYGSKSTADQVTQHVHLPSSSSSSSPSSSSSXXXXXXXXXXPYPAIITGATSGIGVETARVLAKRGVRVVIAARDINRASKVRQA ILDQNTEADIIVLELDLSSFASISAFSHHFLSLGLPLHILMYCLLTKLGIGPSELTAARNVCCLTLGVAGHFLLTELLMEKMIETAEERGIHGRIINLSS AIHSWVKKESFSFQKMMNPAAAKYNGTRAYAQTKLAAILHAKELSRQLKARNAKVTVNAVHPGIIKTGIIRAHKGFLTDSVYFIASKLLKSVPQGASTTC YVALSPKTEGVGGKYFADCNESNCSSLGNDDAEALKLCHLTRAFIHRRLLLQQQQATTTTQTKTATSRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50130			NAD(P)-binding Rossmann-fold s...		Lus10018092 [exp]	0	1
AT1G75020		LPAT4	lysophosphatidyl acyltransfera...		Lus10032727 [exp]	1.4	0.8981
AT1G06450			Polynucleotidyl transferase, r...		Lus10017894 [exp]	4.1	0.7884
					Lus10001769 [exp]	15.2	0.8330
AT3G57220			Glycosyl transferase family 4 ...		Lus10016077 [exp]	21.7	0.8116
AT1G50670			OTU-like cysteine protease fam...		Lus10021522 [exp]	23.4	0.7820
AT1G02630			Nucleoside transporter family ...		Lus10002167 [exp]	24.7	0.8130
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10042345 [exp]	27.8	0.8328
AT4G40070			RING/U-box superfamily protein...		Lus10034157 [exp]	28.4	0.8163
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10015442 [exp]	29.1	0.8093
AT1G05170			Galactosyltransferase family p...		Lus10039657 [exp]	33.0	0.7713

Compare expression of checked genes

Lus10018092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.