Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01570 171 / 2e-46 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G66350 168 / 7e-46 GRAS RGL1 RGA-like 1 (.1) AT3G03450 163 / 9e-44 GRAS RGL2 RGA-like 2 (.1) AT1G14920 160 / 7e-43 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT5G17490 156 / 1e-41 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT5G41920 139 / 2e-36 GRAS GRAS family transcription factor (.1) AT1G07530 135 / 1e-33 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT5G59450 134 / 1e-33 GRAS SCL11 GRAS family transcription factor (.1) AT5G48150 130 / 9e-33 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G29065 130 / 5e-32 GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018098 [exp] 543 / 0 AT2G01570 165 / 9e-45 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10022414 [exp] 536 / 0 AT2G01570 169 / 5e-46 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10018100 [exp] 510 / 2e-178 AT2G01570 162 / 1e-43 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10018101 [exp] 455 / 5e-157 AT2G01570 162 / 4e-44 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10016897 [exp] 313 / 4e-100 AT3G03450 189 / 5e-53 RGA-like 2 (.1) Lus10037758 [exp] 311 / 4e-99 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10036459 [exp] 307 / 3e-98 AT3G03450 171 / 1e-46 RGA-like 2 (.1) Lus10037753 [exp] 299 / 3e-95 AT1G66350 156 / 8e-42 RGA-like 1 (.1) Lus10016893 [exp] 293 / 7e-92 AT3G03450 175 / 1e-47 RGA-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143600 [exp] 374 / 1e-123 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.010G143500 [exp] 342 / 1e-111 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.010G143700 [exp] 338 / 1e-109 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143400 [exp] 329 / 2e-107 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.002G195600 [exp] 278 / 1e-86 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.010G143200 [exp] 269 / 1e-84 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.014G120000 [exp] 224 / 2e-66 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.008G131700 [exp] 181 / 4e-50 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 165 / 2e-44 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 163 / 1e-43 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10018099 pacid=23145211 polypeptide=Lus10018099 locus=Lus10018099.g ID=Lus10018099.BGIv1.0 annot-version=v1.0 ATGTTCCACGCCGGAAACACAGCATGGGAAACAACAGATGATGATGATGATGAAACAATGTTGGTGGATCTCAATGCCCTTCTCCAACACCATTGGTTAG CCACCATGCTTCCTGATGATCATCATCCCCAACCTTGTTCTGTTGATCATCACTCCCTCCAACATGATCATCAGCAACCCTTGTTTTCGTCCTCGTCACT TGAGCTGATTCGAAGCAGTGTCCGAAAATCTTTCATACGCAATCACCACAGAATAGCAGCAGATGATGATTATAGTACCCCTGATCATGAAGAACCGTCA CTAACTGAAATCATCAGAATCGCAGCAGCAGCATTTATCAAATCTTCATCGAAACCTCCTGCAGGTGATGACTGTGCACCCTTTCTCGATCTTAATTTCT CGTCATATAACGAGGATGTGACGAAGAAGGTACAACATTTTCAGTACCTTATGAGCGCTGCTGAGAAAGTGGGATGCCGTAACTTCGAGCAAGCAATCAG CTTGCTCGATGTTTGTGATTCTCTGTCCTCTAGGACAGGGAACCTCATTCAGAGACTTGTCTACTATTTCTCAAATGCTCTTCGCGAAAGGGTTTACAAC GAATCTAGAGTGAAAATATCTAGTCTCGTGGAAGAATTAGAGAAGTTGAACATTGAAGAGGCTGTCACAGCTCCATCTCCTATTCTCGGAGTTATTTACG CGAAAATTCCGTTTTACCAAGTTGGACAGTTAGCTGGAGTTCAGGCAATAGTGGAGAGTGTAAAGAAAGCAAAGAGGATTCATATCATTGACCTCAGAAT CAGAAACGGTATGCAGTGGACAGCCCTGATGCAAGCTCTAGCCTCGCGGAGGAAACGAACTCCAGAGATGTTGAAGATAACAGCCATTGTGACTTCCAGT GCAAGCAAATTAGTACGTGAAACTGGGGAGCGGCTAGCTAAGTTCGCAGAGTCATTGAACATACCCTTCGCGTTTAGAATGGCAGTGGTACCAAACATGC TGGAAATAGACAGGAAGCAGTTCGACCTCGATCCTGGAGATGCAGTAGCCATCTTCTCCGAGTACGCATTACACGACCTCATCCCCAACCAAACTCAACT AGATGCATTCATGCTTGTGATGAGGGACGTCAAACCTACAGTGATGGTGGTGATTGAAATAGAAGCCAAACTCAATGGTTTGAACTTCGGCCACAGGTTC GTCGAAGCTCTCTTCCATTACGGTGCCTATTTTGATTGCGTCGATTCTTGTTTGGGCACAAAGGACGACAAGATGGCTATGGAGTCCGTGTTTTTGGGTG AGCAAGTGAATGCCGTGTTGGTGGAGGAAATGAAGAGGACTGCGACAATTGAGGTGTGGAGGAAATTCTTTGGTCGGTTTTGGATGGTGGAGGATGATTT GAGTCCGACAACTATGGAGACTGTGAATCTGTTACTGTGCAGATTTGCGAATGGAAAGTGTTGTACAGTGGATAAGGATGGAAGATGTTTGGTCATGGGA TGGAAAGGGACACCTATCTTCTCTCTTTCGGCTTGGAACTTCCTCCAAGCAAAACCCTCGTCATCAGAGAACCGATAG
AA sequence Show only first row Show all	>Lus10018099 pacid=23145211 polypeptide=Lus10018099 locus=Lus10018099.g ID=Lus10018099.BGIv1.0 annot-version=v1.0 MFHAGNTAWETTDDDDDETMLVDLNALLQHHWLATMLPDDHHPQPCSVDHHSLQHDHQQPLFSSSSLELIRSSVRKSFIRNHHRIAADDDYSTPDHEEPS LTEIIRIAAAAFIKSSSKPPAGDDCAPFLDLNFSSYNEDVTKKVQHFQYLMSAAEKVGCRNFEQAISLLDVCDSLSSRTGNLIQRLVYYFSNALRERVYN ESRVKISSLVEELEKLNIEEAVTAPSPILGVIYAKIPFYQVGQLAGVQAIVESVKKAKRIHIIDLRIRNGMQWTALMQALASRRKRTPEMLKITAIVTSS ASKLVRETGERLAKFAESLNIPFAFRMAVVPNMLEIDRKQFDLDPGDAVAIFSEYALHDLIPNQTQLDAFMLVMRDVKPTVMVVIEIEAKLNGLNFGHRF VEALFHYGAYFDCVDSCLGTKDDKMAMESVFLGEQVNAVLVEEMKRTATIEVWRKFFGRFWMVEDDLSPTTMETVNLLLCRFANGKCCTVDKDGRCLVMG WKGTPIFSLSAWNFLQAKPSSSENR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10018099 [exp]	0	1
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Lus10004657 [exp]	9.3	0.7223
AT1G63300			Myosin heavy chain-related pro...		Lus10017237 [exp]	55.3	0.6741
					Lus10027418 [exp]	101.3	0.6034
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10040475 [exp]	117.7	0.6350
AT5G59190			subtilase family protein (.1)		Lus10000018 [exp]	120.8	0.6139
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10015988 [exp]	178.3	0.6128
					Lus10019796 [exp]	190.4	0.5965
					Lus10000363 [exp]	230.0	0.5767
					Lus10003285 [exp]	230.5	0.5767
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10003300 [exp]	230.9	0.5767

Compare expression of checked genes

Lus10018099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.