Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01570 162 / 1e-43 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G14920 160 / 2e-43 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT3G03450 156 / 7e-42 GRAS RGL2 RGA-like 2 (.1) AT1G66350 154 / 3e-41 GRAS RGL1 RGA-like 1 (.1) AT5G17490 149 / 2e-39 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT5G41920 140 / 7e-37 GRAS GRAS family transcription factor (.1) AT1G55580 134 / 1e-34 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT4G17230 131 / 6e-33 GRAS SCL13 SCARECROW-like 13 (.1) AT3G54220 127 / 2e-31 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT5G48150 125 / 3e-31 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022414 [exp] 566 / 0 AT2G01570 169 / 5e-46 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10018098 [exp] 564 / 0 AT2G01570 165 / 9e-45 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10018099 [exp] 520 / 0 AT2G01570 171 / 1e-46 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10018101 [exp] 487 / 2e-170 AT2G01570 162 / 4e-44 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10036459 [exp] 310 / 6e-100 AT3G03450 171 / 1e-46 RGA-like 2 (.1) Lus10037753 [exp] 305 / 3e-98 AT1G66350 156 / 8e-42 RGA-like 1 (.1) Lus10016897 [exp] 293 / 4e-93 AT3G03450 189 / 5e-53 RGA-like 2 (.1) Lus10037758 [exp] 291 / 3e-92 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10016893 [exp] 291 / 3e-92 AT3G03450 175 / 1e-47 RGA-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143600 [exp] 379 / 2e-126 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.010G143500 [exp] 348 / 9e-115 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.010G143700 [exp] 343 / 2e-112 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143400 [exp] 315 / 2e-102 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.002G195600 [exp] 300 / 7e-96 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.010G143200 [exp] 273 / 5e-87 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.014G120000 [exp] 253 / 8e-78 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.008G131700 [exp] 169 / 2e-46 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 161 / 2e-43 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 157 / 6e-42 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10018100 pacid=23145271 polypeptide=Lus10018100 locus=Lus10018100.g ID=Lus10018100.BGIv1.0 annot-version=v1.0 ATGTTCCATTCTCCAAATCTGCCAACTGAAACAGATGATCAAACACTTGGAAACCAATCCTTGTTTTCTCCAGTCTCGGTTGAGCTGCTCAGGAAAGTAG TAGAACGAATCCGAACGACATCGGAGCAAGACATCTCGCTACCGGACATCATCAGGATTGCAGCAGCAAGGTTTATCGGCTCTTCGTCCGAACCACCTGA TCTTCCCCCCTCTAACAAAGTGGTGACAAAGGAAGTCGAACTCGTACAGTGCCTTCTGAATGCAGCCAACGAAATGGACCATGAGAAGTACGACCAATCA ATCCGCTCGCTGGATATCTGCGATTCCTCATCTTCCAAGACCGGAAATCTCACCGAGAGACTTGTGCACTACTTTGCACAAGCACTTCGTACAAGGGTGT ATAACAAATCCGGAGGAGTGCCCTTGTCGAGTGTCGTGGAGGGATTCGAGCAGCTGAACGTTGAAGAGGCTGTCACGGCTCCATCCCCTATAGTGGGACT CATTTACTCCAAAATTCCATTCTACCAAGTCGGTCAGCTAGTCGGAGTCCAAGCCATAGTGGACAGTGTCAAGAAATCAAAGAGGATTCATATCATTGAC CTCAGAATCAGAAATGGTATGCAGTGGCCAGCTTTGATGCAAGCTCTAATCACGCGAAGCAGGAGAGATCTCTTGGTGCTGAAGATCACAGCGATCGTGA CTAGTTGTGAGGATTTAGTCAATGAAACTGGGGAAAGGCTGTCGAGGTTAGCCAAGTCAATGAATATACCCTTCTCTTTCAAAACTGTAGTGGTTACAAG CATTCTCGAAATCGACCAGAGCCGGTTCGATCTTGATCCCCGAGAAGAGGTAGTTATATTCTCCGAGTACGCGTTGCACGGACTCATTCCTGATCAAATT CAGCTGGAAGCACTCATGATTGTTATTAGGAACATCCATCCAGCAATAATGGTGGTGATTGAAAAAGAGGCCAACCTCAACTCTTCGAGCTTTGCTCACA GGTTTGTTGAGGTTCTGTTTTACTACGCTGCATACTTTGATTGCATAGATACTTGTTTGGACTCCAATGACAAGAACAAGATGGTTGTGGAGTCGATGTT TTTGAATGCTCAAGTGAATGGAATTTTGGTGAAGGAGAAGGCAATGAGGAGGAGTGTGACAATTGATGTGTGGAGGAAATTTTTTGGTCGGTTTTGGATG GTGGAAGCTACTTTGAGTCCGAGGGCAATGGATACGGTGAATGTGTTGCTTAATAGTTTTTTGGGGGGAAGTTGTTGTACGGTAGATATGAATCGGAGAA GTTTGGTGGTTGGATGGAAAGACACACCAATCTTTTCACTTTCTACATGGAAGTTCCTCCGTGCAAAACCACATAAGCCAGCCAAGAACAAGGAGAAAAT GAACACTTGTTAG
AA sequence Show only first row Show all	>Lus10018100 pacid=23145271 polypeptide=Lus10018100 locus=Lus10018100.g ID=Lus10018100.BGIv1.0 annot-version=v1.0 MFHSPNLPTETDDQTLGNQSLFSPVSVELLRKVVERIRTTSEQDISLPDIIRIAAARFIGSSSEPPDLPPSNKVVTKEVELVQCLLNAANEMDHEKYDQS IRSLDICDSSSSKTGNLTERLVHYFAQALRTRVYNKSGGVPLSSVVEGFEQLNVEEAVTAPSPIVGLIYSKIPFYQVGQLVGVQAIVDSVKKSKRIHIID LRIRNGMQWPALMQALITRSRRDLLVLKITAIVTSCEDLVNETGERLSRLAKSMNIPFSFKTVVVTSILEIDQSRFDLDPREEVVIFSEYALHGLIPDQI QLEALMIVIRNIHPAIMVVIEKEANLNSSSFAHRFVEVLFYYAAYFDCIDTCLDSNDKNKMVVESMFLNAQVNGILVKEKAMRRSVTIDVWRKFFGRFWM VEATLSPRAMDTVNVLLNSFLGGSCCTVDMNRRSLVVGWKDTPIFSLSTWKFLRAKPHKPAKNKEKMNTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10018100 [exp]	0	1
AT1G51340			MATE efflux family protein (.1...		Lus10026303 [exp]	4.4	0.9190
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10022329 [exp]	8.7	0.9062
AT2G20030			RING/U-box superfamily protein...		Lus10012975 [exp]	14.2	0.8971
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10013304 [exp]	16.5	0.8725
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016471 [exp]	21.4	0.8940
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10016310 [exp]	23.4	0.8876
AT5G10530			Concanavalin A-like lectin pro...		Lus10004277 [exp]	25.1	0.8830
AT1G11340			S-locus lectin protein kinase ...		Lus10007604 [exp]	26.1	0.8825
AT5G51160			Ankyrin repeat family protein ...		Lus10041537 [exp]	26.9	0.8838
AT1G78780			pathogenesis-related family pr...		Lus10018919 [exp]	27.6	0.8597

Compare expression of checked genes

Lus10018100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.