Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01570 161 / 1e-43 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G14920 160 / 2e-43 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT1G66350 159 / 4e-43 GRAS RGL1 RGA-like 1 (.1) AT3G03450 157 / 2e-42 GRAS RGL2 RGA-like 2 (.1) AT5G17490 149 / 2e-39 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G55580 135 / 6e-35 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT5G41920 133 / 1e-34 GRAS GRAS family transcription factor (.1) AT5G66770 131 / 7e-33 GRAS GRAS family transcription factor (.1) AT2G04890 124 / 3e-31 GRAS SCL21 SCARECROW-like 21 (.1) AT3G54220 126 / 4e-31 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018100 [exp] 488 / 1e-170 AT2G01570 162 / 1e-43 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10018098 [exp] 487 / 2e-170 AT2G01570 165 / 9e-45 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10022414 [exp] 482 / 3e-168 AT2G01570 169 / 5e-46 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10018099 [exp] 456 / 3e-157 AT2G01570 171 / 1e-46 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10036459 [exp] 308 / 2e-99 AT3G03450 171 / 1e-46 RGA-like 2 (.1) Lus10037753 [exp] 285 / 5e-91 AT1G66350 156 / 8e-42 RGA-like 1 (.1) Lus10016897 [exp] 276 / 7e-87 AT3G03450 189 / 5e-53 RGA-like 2 (.1) Lus10041128 [exp] 272 / 8e-86 AT1G66350 162 / 6e-44 RGA-like 1 (.1) Lus10037758 [exp] 264 / 5e-82 AT3G03450 186 / 6e-52 RGA-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143600 [exp] 345 / 1e-113 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.010G143700 [exp] 333 / 8e-109 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143500 [exp] 311 / 1e-100 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.010G143400 [exp] 297 / 8e-96 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.002G195600 [exp] 278 / 9e-88 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.010G143200 [exp] 233 / 1e-71 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.014G120000 [exp] 233 / 2e-70 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.008G131700 [exp] 165 / 5e-45 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 160 / 3e-43 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 158 / 2e-42 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10018101 pacid=23145255 polypeptide=Lus10018101 locus=Lus10018101.g ID=Lus10018101.BGIv1.0 annot-version=v1.0 ATGGAGAATTCTTCTTCGACAGTACTGGACCGTAGAACGCCACCGTTTACATCACAAGAACCGTCACTACTGGATATCATAAGGATTGCAGCACTTGGGT TGATCCATTCTTCTCATCATCAGTCCACAATATTCCAACTTCCACCATATAATAAAGAGGTCACACTTGTCCAGTGCCTTCTTAACGCTGCCGAAGAAGT TGACCACTGCAACTACGACCAAGCAATCTTCTTGCTCGACCTATGTAACTCATCATCTTCCAAGACGAGCAATAATCTAACCGAGAGGCTCGTCTACTAC TTCAGTCAAGCCCTCTGCCAACGAGTTCGTAACAAATCGGGGAAGCACATATCTAATGCTCCTCTTTCTGAGGAGAACTTAGAGATGGGGATGAAGAGCT GCGTGGAGGCTGTAGCAGGTCCATCTCCAATCCTCGGAGTAATTTACGAGAAAATCCCCTTCTACCAGGTTCGGCAGCTAGCCGGAGTTCAAGCAATAGT TGAGAGTGTGGAGAAAGCAAAGAGGATTCATATAATTGACCTCAGAATCAGAAACGGTATGCAGTGGACCGCCCTGATGCAAGCTTTAGCGTCACGAAAG AAAGGAGCTCTCGTCGTAATTCTGAAGATCACAGCCATTGCTGTGACAAGTGACGTTGAAAACACAGTCGTTGAAACAGGGAAGAGGCTAGCTAGATTCG CTAAGTCAATGAACATACCCTTCGTTTTCAAAACTCTAGCGGTACCGAACATGCTCGAAATCCGGAAGAAGGAATTCGAACTCGACCTGAGAGAAGTGGT AGCTATCTACTGCGAGAACTCGTTGCACAAGCTCATCCAAAAGCCGGACCAAATAGAAGCCTTTATGGGTGTCGTCAGGAACATCCGTCCGAAAGTAATG GTGGTCACTGAAAGGGAGGCGAATTTCAACTCTACGAACTTCGCGCACAGGTTCGTTGAAGTTCTGTTCCACTACGGTGCGTACTTCGATTGCATTGATG CTTGTTTGGGCTCGGACCAAGGGAACAAGATGGTTATGGAATCCGTGTTTTTGAGGGATCAAGTGAATGCTCTATTGGCGAAGGAGGGAAAAGAAATGAC GACGACTACGACGATCGACGTGTGGAGAAAGTTCTTCAGTCGGTTTTGGATGGCAGAGGCTAGGTTGAGTCCGACGACGATGGAGACGGTGAATTTGTTA CTTGACAGATTTTCGGAAGGGAAGTTTTGTAATGTGGATATGAATGGGAGAAGTATGGTGGTGGGATGGAAAGAGACGCCAATATTTTCGCTTTCGACTT GGAAGTTCCTTCTTGTCAAGCCACTGAAACGCGTGAATAAAAAGTGA
AA sequence Show only first row Show all	>Lus10018101 pacid=23145255 polypeptide=Lus10018101 locus=Lus10018101.g ID=Lus10018101.BGIv1.0 annot-version=v1.0 MENSSSTVLDRRTPPFTSQEPSLLDIIRIAALGLIHSSHHQSTIFQLPPYNKEVTLVQCLLNAAEEVDHCNYDQAIFLLDLCNSSSSKTSNNLTERLVYY FSQALCQRVRNKSGKHISNAPLSEENLEMGMKSCVEAVAGPSPILGVIYEKIPFYQVRQLAGVQAIVESVEKAKRIHIIDLRIRNGMQWTALMQALASRK KGALVVILKITAIAVTSDVENTVVETGKRLARFAKSMNIPFVFKTLAVPNMLEIRKKEFELDLREVVAIYCENSLHKLIQKPDQIEAFMGVVRNIRPKVM VVTEREANFNSTNFAHRFVEVLFHYGAYFDCIDACLGSDQGNKMVMESVFLRDQVNALLAKEGKEMTTTTTIDVWRKFFSRFWMAEARLSPTTMETVNLL LDRFSEGKFCNVDMNGRSMVVGWKETPIFSLSTWKFLLVKPLKRVNKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10018101 [exp]	0	1
AT5G38195			Bifunctional inhibitor/lipid-t...		Lus10033573 [exp]	6.0	0.7911
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10040136 [exp]	8.5	0.8561
AT4G15620			Uncharacterised protein family...		Lus10031998 [exp]	10.7	0.8094
AT3G49400			Transducin/WD40 repeat-like su...		Lus10008595 [exp]	14.8	0.8220
AT1G63640			P-loop nucleoside triphosphate...		Lus10024628 [exp]	15.6	0.8383
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10038514 [exp]	16.2	0.7829
AT3G59030		ATTT12, TT12	TRANSPARENT TESTA 12, A. THALI...		Lus10033596 [exp]	24.7	0.8157
AT1G65890		AAE12	acyl activating enzyme 12 (.1)		Lus10020787 [exp]	25.5	0.7889
AT1G76750			Protein of unknown function (D...		Lus10027057 [exp]	25.7	0.7285
AT2G28610	HD	PRS1, PRS, WOX3	WUSCHEL RELATED HOMEOBOX 3, PR...		Lus10038480 [exp]	27.2	0.8048

Compare expression of checked genes

Lus10018101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.