Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28550 314 / 2e-102 AP2_ERF TOE1, RAP2.7 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) AT4G36920 285 / 1e-91 AP2_ERF FL1, FLO2, AP2 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) AT5G67180 263 / 2e-84 AP2_ERF TOE3 target of early activation tagged (EAT) 3 (.1) AT5G60120 210 / 3e-62 AP2_ERF TOE2 target of early activation tagged (EAT) 2 (.1), target of early activation tagged (EAT) 2 (.2) AT3G54990 151 / 1e-42 AP2_ERF SMZ SCHLAFMUTZE, Integrase-type DNA-binding superfamily protein (.1.2) AT5G57390 155 / 2e-41 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT1G51190 154 / 7e-41 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT1G72570 150 / 2e-40 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G20840 152 / 3e-40 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT4G37750 146 / 4e-38 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036141 [exp] 584 / 0 AT2G28550 330 / 4e-108 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10041595 [exp] 282 / 2e-90 AT4G36920 370 / 2e-125 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10023165 [exp] 280 / 4e-88 AT4G36920 302 / 2e-97 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10004990 [exp] 279 / 5e-88 AT4G36920 369 / 2e-123 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10015055 [exp] 277 / 6e-88 AT2G28550 302 / 1e-97 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10026477 [exp] 273 / 9e-88 AT4G36920 298 / 3e-98 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10009374 [exp] 275 / 2e-87 AT4G36920 394 / 2e-134 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10019331 [exp] 275 / 3e-87 AT4G36920 392 / 1e-133 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10019905 [exp] 268 / 5e-84 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G045300 [exp] 308 / 2e-99 AT2G28550 292 / 1e-93 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.006G132400 [exp] 294 / 2e-94 AT2G28550 307 / 2e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.016G084500 [exp] 288 / 5e-92 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.007G046200 [exp] 281 / 7e-89 AT4G36920 361 / 2e-120 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.005G140700 [exp] 280 / 9e-89 AT4G36920 355 / 1e-118 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.010G216200 [exp] 254 / 4e-79 AT2G28550 263 / 9e-83 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.001G018400 [exp] 154 / 6e-41 AT1G51190 639 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.001G169500 [exp] 153 / 9e-41 AT1G72570 389 / 2e-131 Integrase-type DNA-binding superfamily protein (.1) Potri.003G205700 [exp] 152 / 2e-40 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.002G114800 [exp] 153 / 4e-40 AT4G37750 459 / 5e-155 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10018124 pacid=23145205 polypeptide=Lus10018124 locus=Lus10018124.g ID=Lus10018124.BGIv1.0 annot-version=v1.0 ATGTTGGATCTTAATCTGAGTGTGGAATCGGCCGAGTCGACTCACGATTGTTACTCGATCTCTTTCGTGGAGAACAACTACGAGAGTCATCTGCTGCAGC CCGAGGCATCAGGGACGTCTAACTCCTCGGTCGTTAATGCGGAAGTGTCGAGCAACGAAGAGTCGTGCTCCACACGCGCCCAAGCTGCCAACAACGACAG AAGCTACCGTAGCGGCGGCAACCCCATCCGTGCCGACGAAGCCGACGTCGTTGTTACCAAAGATTTCTTCCCAGTGAGCCACGGGAAGCTAGAATCTGGT GGGGGCTTCGTTTGCCCGCCGGGGAATTGGATCAATCTGACGTTCGACAGGCAGGATGAGATTTCCAGTGGTGGTGGTGGAAACGGGGGAGCGGTACGGG TGATACATCAAGCGTCACAGCATGTGAAGAAGAGCAGGAGGGGCCCAAGGTCCCGAAGCTCACAGTACAGAGGAGTTACCTTTTACAGGCGCACTGGGAG ATGGGAATCTCATATATGGGACTGCAGGAAACAGGTTTATCTGGGTGGATTTGACACTGCTCATGCTGCTGCGAGAGCCTATGATCGAGCTGCTATCAAG TTCAGGGGAGTTGATGCTGACATCAACTTTAGTATTGGAGACTATGAGGAAGATATGGAGCAGATGAAGAATCTGGAAAAGGAGGAATTTGTGCATATAT TGCGTCGCCAAAGCACTGGTTTCTCCAGAGGGAGTTCAAAGTATCGAGGAGTGACGTTGCACAAATGTGGCTGGTGGGAAGCTAGAATGGGACAGTTCCT TGGGAAAAAGTATATATATCTTGGACTGTTCGACAGCGAGGTAGAAGCTGCAAGGGCTTATGACAAGGCAGTCATCAACTGCAACGGGAGGGAAGCGGTG ACCAACTTTGAGCCCAGTACATATGTCGGGGAGATGCCTTCTGACTCTCGTATCGAAGGAACAGGCCAAAACCTCAACCTTAACTTCGCAATATCACCTT CTTTAGCCGGTTGTTCTATGGAAACTGGAGGCCAACTTCCGTTCCATCCTGGCCCGACGGGTTTACGTAGTAGGAATTCAAAGATGGAGAACCCAATGGG CAAAATGGTTGGTGATCCTCATCTTAATGGTCTTGTGAGAATGACGGATCACGCAATGCCCTTAAACGGTGCATATGCCACTTTCTTCAAAAGCGAGAGG TCTCTAAGCACGCGACGGGTCGGCGAAGCTCGGAGACGGGGAGCTGCTGAGAACGCAACAGAGGCCCATCTACGATCGGGAAGATGGATTAAAGACGATT CGTTTATCACTGGCAGAAGGCGGCTCACTCGACGGCGGAGAAGAGCACGGAGATTCAGATCTTGCATGGTTAAGTCGGTTAGAGTCGGTCAAATCGGTGA AAGTCGATTTTCTGGATTAATATACATGTAG
AA sequence Show only first row Show all	>Lus10018124 pacid=23145205 polypeptide=Lus10018124 locus=Lus10018124.g ID=Lus10018124.BGIv1.0 annot-version=v1.0 MLDLNLSVESAESTHDCYSISFVENNYESHLLQPEASGTSNSSVVNAEVSSNEESCSTRAQAANNDRSYRSGGNPIRADEADVVVTKDFFPVSHGKLESG GGFVCPPGNWINLTFDRQDEISSGGGGNGGAVRVIHQASQHVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCRKQVYLGGFDTAHAAARAYDRAAIK FRGVDADINFSIGDYEEDMEQMKNLEKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGWWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAVINCNGREAV TNFEPSTYVGEMPSDSRIEGTGQNLNLNFAISPSLAGCSMETGGQLPFHPGPTGLRSRNSKMENPMGKMVGDPHLNGLVRMTDHAMPLNGAYATFFKSER SLSTRRVGEARRRGAAENATEAHLRSGRWIKDDSFITGRRRLTRRRRRARRFRSCMVKSVRVGQIGESRFSGLIYM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10018124 [exp]	0	1
AT4G23730			Galactose mutarotase-like supe...		Lus10017549 [exp]	1.7	0.8028
AT1G15110		PSS1	phosphatidylserine synthase 1,...		Lus10000366 [exp]	7.3	0.6891
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10031840 [exp]	8.7	0.7693
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10017721 [exp]	9.8	0.7267
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10018381 [exp]	16.2	0.7355
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10035692 [exp]	31.9	0.6912
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10037212 [exp]	32.3	0.6879
AT1G65390		ATPP2-A5	phloem protein 2 A5 (.1.2)		Lus10018303 [exp]	35.8	0.7386
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10008429 [exp]	36.5	0.7187
AT5G06740			Concanavalin A-like lectin pro...		Lus10009423 [exp]	57.9	0.7061

Compare expression of checked genes

Lus10018124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.