Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15960 535 / 0 ATNRAMP6, NRAMP6 NRAMP metal ion transporter 6 (.1) AT1G80830 530 / 0 ATNRAMP1, PMIT1, NRAMP1 natural resistance-associated macrophage protein 1 (.1) AT1G47240 303 / 9e-97 ATNRAMP2, NRAMP2 NRAMP metal ion transporter 2 (.1) AT4G18790 300 / 3e-95 ATNRAMP5, NRAMP5 NRAMP metal ion transporter family protein (.1) AT5G67330 299 / 5e-95 ATNRAMP4 ARABIDOPSIS THALIANA NATURAL RESISTANCE ASSOCIATED MACROPHAGE PROTEIN 4, natural resistance associated macrophage protein 4 (.1) AT2G23150 294 / 3e-93 ATNRAMP3, NRAMP3 natural resistance-associated macrophage protein 3 (.1) AT5G03280 116 / 6e-27 CKR1, PIR2, ORE3, ORE2, ERA3, EIN2, ATEIN2 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028542 [exp] 926 / 0 AT1G15960 624 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10024069 [exp] 534 / 0 AT1G15960 822 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10041652 [exp] 530 / 0 AT1G15960 826 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10010395 [exp] 304 / 4e-97 AT1G47240 759 / 0.0 NRAMP metal ion transporter 2 (.1) Lus10014868 [exp] 303 / 5e-97 AT1G47240 763 / 0.0 NRAMP metal ion transporter 2 (.1) Lus10004317 [exp] 298 / 3e-94 AT1G47240 793 / 0.0 NRAMP metal ion transporter 2 (.1) Lus10032853 [exp] 297 / 4e-94 AT1G47240 793 / 0.0 NRAMP metal ion transporter 2 (.1) Lus10013803 [exp] 116 / 8e-27 AT5G03280 627 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Lus10026517 [exp] 113 / 6e-26 AT5G03280 1057 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G181000 [exp] 741 / 0 AT1G80830 571 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.002G080400 [exp] 731 / 0 AT1G80830 546 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.005G181100 [exp] 730 / 0 AT1G80830 550 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.002G080500 [exp] 721 / 0 AT1G80830 590 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.001G044900 [exp] 536 / 0 AT1G15960 744 / 0.0 NRAMP metal ion transporter 6 (.1) Potri.007G050600 [exp] 300 / 7e-96 AT2G23150 765 / 0.0 natural resistance-associated macrophage protein 3 (.1) Potri.007G050700 [exp] 297 / 9e-95 AT2G23150 768 / 0.0 natural resistance-associated macrophage protein 3 (.1) Potri.002G121000 [exp] 291 / 8e-92 AT1G47240 790 / 0.0 NRAMP metal ion transporter 2 (.1) Potri.006G127100 [exp] 142 / 2e-35 AT5G03280 1261 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Potri.016G090800 [exp] 133 / 1e-32 AT5G03280 1348 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01566 [flax] [poplar] Nramp Natural resistance-associated macrophage protein
Representative CDS sequence Show only first row Show all	>Lus10018132 pacid=23145197 polypeptide=Lus10018132 locus=Lus10018132.g ID=Lus10018132.BGIv1.0 annot-version=v1.0 ATGGCTCACCAAATTCCATCTTCCGACGCCGGCCATCCGACCAACCGTGTCACCGCCGTCAACGTCACCCCTTCCCCTCCCCACTTTTCCTCCGGCAACA ACGATGGCCCTTTCCCTTCCTCCTCCGACTCTGACGACCAACAGCCTGGATGGAAGAAGTTTATGAAATGTATTGGGCCTGGATTCCTCGTCTCATTAGC CTATCTCGACCCTGGAAACTTGGAAACAGATTTGCAGGCAGGTGCTAACCATGGTTACGAGCTACTCTGGATTATACTAATCGGGTTGATTTTCGCTCTA ATCATCCAATCTCTCGCGGCCAATCTCGGTGTCAGCACCGGGAAACACTTATCGGAATTGTGCAAGGCTGAGTACCCGCCGTTTGTGAAGATATGTCTTT GGTTGCTGGCCGAACTCGCTGTAATTGCTGCCGACATACCCGAAGTGATTGGGACAGCTTTTGCTCTGAACATATTGTTTCACATCCCAGTTTGGGCCGG CGTCTTGTTAACTGGCAGCAGCACCTTGTTACTTCTTGGCCTGCAAAAATATGGGGTAAGGAAGCTGGAGATGTTGATATCAGTGTTGGTATTCGTAATG GCTGCTTGCTTCTTCGGCGAAATGAGTTTTGTCAAGCCGCCGGCGAAAGATGTTCTTAAAGGCATGTTTATCCCCAAACTTGCCGGCCAAAGCGCCACCG GCGACGCCATTGCCCTCCTCGGCGCCCTTATCATGCCGCATAATCTGTTTCTCCACTCGGCTTTGGTCCTTTCCCGAAAAGTCCCGAATTCTGTCCGTGG AGTCAACGATGCTTGCCGGTATTTCCTGATCGAGAGCGGATTCGCACTGTTCGTGGCGTTCCTGATCAACGTGTCGGTCATCTCTGTCTCCGGCAAAGTC TGCTCGGCGACTAACATCTCGCCGGAGAATGCAGAACGTTGTAGCGACCTCACTCTCAACTCTGCTTCTTTCCTTCTTAAGAATGTGTTGGGAAGATCAA GCAAGATCCTATATGGGGTAGCATTGTTAGCTTCAGGGCAGAGTTCAGCAATCACAGGGACATATGCAGGGCAGTTCATAATGCAAGGGTTCTTGGATCT CAAGATGAGGCCTTGGTTGAGGAACCTTATTACGCGGTCTATCGCCATTACTCCTAGCCTCATCGTTGCCATCATCGGAGGATCTGCTGGTGCCGGTAGA CTCATCATCATCGCTTCGATGATACTATCATTTGAGCTGCCATTTTCACTCATCCCACTTCTGAAATTCAGCAGTAGCAAAACCAAGATGGGACCTTACA AGAACTCGATTTATATCATCGTCGTGTCGTGGGTTCTCGGGCTAGGAATCATCGGCATCAACGTCTACTACCTAACGACCGGGTTTGTGGGTTGGTTAGT AGACAGTGACCTCCACAAAGTTGGGAAAGTGTTCATAGGGATCCTGGTTTTCCCACTCATGGCAATCTATGTTCTCGCCGTCATCTACCTAACATTCAGG AAGGATGTCGTCGAGACTTACATCGAGCCGGTTAAGAACCAATCGGCGGCCGAAGAAGGGCTCGGAGAGGCTGGTGACAAGTTGCATTACAGGGAGGACT TGGCTAGTGTCCCACTGCCCAAATAA
AA sequence Show only first row Show all	>Lus10018132 pacid=23145197 polypeptide=Lus10018132 locus=Lus10018132.g ID=Lus10018132.BGIv1.0 annot-version=v1.0 MAHQIPSSDAGHPTNRVTAVNVTPSPPHFSSGNNDGPFPSSSDSDDQQPGWKKFMKCIGPGFLVSLAYLDPGNLETDLQAGANHGYELLWIILIGLIFAL IIQSLAANLGVSTGKHLSELCKAEYPPFVKICLWLLAELAVIAADIPEVIGTAFALNILFHIPVWAGVLLTGSSTLLLLGLQKYGVRKLEMLISVLVFVM AACFFGEMSFVKPPAKDVLKGMFIPKLAGQSATGDAIALLGALIMPHNLFLHSALVLSRKVPNSVRGVNDACRYFLIESGFALFVAFLINVSVISVSGKV CSATNISPENAERCSDLTLNSASFLLKNVLGRSSKILYGVALLASGQSSAITGTYAGQFIMQGFLDLKMRPWLRNLITRSIAITPSLIVAIIGGSAGAGR LIIIASMILSFELPFSLIPLLKFSSSKTKMGPYKNSIYIIVVSWVLGLGIIGINVYYLTTGFVGWLVDSDLHKVGKVFIGILVFPLMAIYVLAVIYLTFR KDVVETYIEPVKNQSAAEEGLGEAGDKLHYREDLASVPLPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15960		ATNRAMP6, NRAMP...	NRAMP metal ion transporter 6 ...		Lus10018132 [exp]	0	1
AT4G19130			Replication factor-A protein 1...		Lus10034056 [exp]	3.5	0.8402
AT5G41600		RTNLB4, BTI3	Reticulan like protein B4, VIR...		Lus10002188 [exp]	3.9	0.8561
AT2G21990			Protein of unknown function, D...		Lus10026148 [exp]	4.0	0.8190
AT1G10385			Vps51/Vps67 family (components...		Lus10017692 [exp]	6.2	0.8489
					Lus10033071 [exp]	8.7	0.8379
					Lus10003695 [exp]	9.7	0.8379
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10009292 [exp]	9.8	0.7338
					Lus10039269 [exp]	10.0	0.7293
					Lus10003774 [exp]	10.7	0.8379
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10005596 [exp]	11.5	0.8379

Compare expression of checked genes

Lus10018132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.